miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10517 5' -58 NC_002687.1 + 224139 0.66 0.961266
Target:  5'- gCGGuGGCGguGGCgcUGgcgCUGGCGCu -3'
miRNA:   3'- gGUC-CCGCguUCGa-ACagaGGCCGCG- -5'
10517 5' -58 NC_002687.1 + 57872 0.66 0.950562
Target:  5'- cCCGGGucGCGUAagggacGGCUUGUUgcauUCCcGCGCu -3'
miRNA:   3'- -GGUCC--CGCGU------UCGAACAG----AGGcCGCG- -5'
10517 5' -58 NC_002687.1 + 114871 0.66 0.950562
Target:  5'- uUCAGGGUGUuuuuGCgaugGUauaUCCGGUGUu -3'
miRNA:   3'- -GGUCCCGCGuu--CGaa--CAg--AGGCCGCG- -5'
10517 5' -58 NC_002687.1 + 307047 0.66 0.946594
Target:  5'- aCCAGucccaGCAGGCUUGUUg--GGCGCa -3'
miRNA:   3'- -GGUCccg--CGUUCGAACAGaggCCGCG- -5'
10517 5' -58 NC_002687.1 + 256223 0.66 0.942422
Target:  5'- aCGGGuGCGCAGGCgacgGUCacgCUGGaCGg -3'
miRNA:   3'- gGUCC-CGCGUUCGaa--CAGa--GGCC-GCg -5'
10517 5' -58 NC_002687.1 + 117937 0.67 0.933459
Target:  5'- --cGGGUGUAGGC--GUCgccaucgCCGGUGCu -3'
miRNA:   3'- gguCCCGCGUUCGaaCAGa------GGCCGCG- -5'
10517 5' -58 NC_002687.1 + 41582 0.67 0.933459
Target:  5'- aUAGGGUcggaucaaguGCAAGgUUGUCUCUGGaGUu -3'
miRNA:   3'- gGUCCCG----------CGUUCgAACAGAGGCCgCG- -5'
10517 5' -58 NC_002687.1 + 212499 0.67 0.932989
Target:  5'- gCCAGuGGCGUggGCgaGUggcugcagauggaCUuuGGUGCc -3'
miRNA:   3'- -GGUC-CCGCGuuCGaaCA-------------GAggCCGCG- -5'
10517 5' -58 NC_002687.1 + 296941 0.67 0.928665
Target:  5'- aCCGGGGgGUGAGCUUGcUCgacuugaCCGGaggagacaaCGCu -3'
miRNA:   3'- -GGUCCCgCGUUCGAAC-AGa------GGCC---------GCG- -5'
10517 5' -58 NC_002687.1 + 48130 0.67 0.928665
Target:  5'- uCCGGuGGCGCAGGUgug---CCGGCcaGCg -3'
miRNA:   3'- -GGUC-CCGCGUUCGaacagaGGCCG--CG- -5'
10517 5' -58 NC_002687.1 + 41453 0.67 0.923662
Target:  5'- aUAGGGUcggauuaagcGCAAGgUUGUUUCUGGacaGCg -3'
miRNA:   3'- gGUCCCG----------CGUUCgAACAGAGGCCg--CG- -5'
10517 5' -58 NC_002687.1 + 200783 0.67 0.923662
Target:  5'- aCgAGGGCGCGcacGGCaucgGgacaUCCGGCGg -3'
miRNA:   3'- -GgUCCCGCGU---UCGaa--Cag--AGGCCGCg -5'
10517 5' -58 NC_002687.1 + 268540 0.68 0.893685
Target:  5'- aCCGGGGCaGCGgcuGCUccauaacacguuugUGUCUCaCGGaGCa -3'
miRNA:   3'- -GGUCCCG-CGUu--CGA--------------ACAGAG-GCCgCG- -5'
10517 5' -58 NC_002687.1 + 268154 0.68 0.882864
Target:  5'- --uGGGUGCucGUca-UCUCCGGCGCc -3'
miRNA:   3'- gguCCCGCGuuCGaacAGAGGCCGCG- -5'
10517 5' -58 NC_002687.1 + 101218 0.68 0.876235
Target:  5'- uUCGGccGCGUAcuuGGCgcgGUCUUCGGCGCu -3'
miRNA:   3'- -GGUCc-CGCGU---UCGaa-CAGAGGCCGCG- -5'
10517 5' -58 NC_002687.1 + 214793 0.69 0.868723
Target:  5'- aCUGGGGCcacauCGAGCUgaaucUGUgcgacgcUUCCGGCGCg -3'
miRNA:   3'- -GGUCCCGc----GUUCGA-----ACA-------GAGGCCGCG- -5'
10517 5' -58 NC_002687.1 + 270359 0.69 0.862409
Target:  5'- --cGGGUGCucGUca-UCUCCGGCGCc -3'
miRNA:   3'- gguCCCGCGuuCGaacAGAGGCCGCG- -5'
10517 5' -58 NC_002687.1 + 64900 0.7 0.832623
Target:  5'- cCCAGGGCuuGAGUg-GUgUCCGGCa- -3'
miRNA:   3'- -GGUCCCGcgUUCGaaCAgAGGCCGcg -5'
10517 5' -58 NC_002687.1 + 154499 0.7 0.824764
Target:  5'- aCAGGGUGCGucuGCUgcGUCUUCuGCGUc -3'
miRNA:   3'- gGUCCCGCGUu--CGAa-CAGAGGcCGCG- -5'
10517 5' -58 NC_002687.1 + 215267 0.7 0.797777
Target:  5'- gCCGGGGUGCAgcgggucaaucgguGGCUccaUCUCUgccggGGCGCg -3'
miRNA:   3'- -GGUCCCGCGU--------------UCGAac-AGAGG-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.