miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10524 3' -49.6 NC_002687.1 + 263185 0.66 0.999965
Target:  5'- aGAUGGUcucguugCGGCGGCAGGugaCGAa -3'
miRNA:   3'- aCUACUAcua----GCUGCCGUUCuugGCU- -5'
10524 3' -49.6 NC_002687.1 + 221794 0.66 0.999965
Target:  5'- aGA-GAUGAUCGACcGCAucauugaccuuGGACUGAa -3'
miRNA:   3'- aCUaCUACUAGCUGcCGUu----------CUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 196203 0.66 0.999965
Target:  5'- aGA-GAUGAUCGACcGCAucauugaccuuGGACUGAa -3'
miRNA:   3'- aCUaCUACUAGCUGcCGUu----------CUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 247817 0.66 0.999964
Target:  5'- -uGUGcgGAcgcgaGACGGCAgaaguucGGAGCCGAc -3'
miRNA:   3'- acUACuaCUag---CUGCCGU-------UCUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 142135 0.66 0.999954
Target:  5'- cGAUGccaaGGUugcCGGCGGCGAucGCCGAg -3'
miRNA:   3'- aCUACua--CUA---GCUGCCGUUcuUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 20837 0.66 0.999954
Target:  5'- cGGUGGUGAacauccugUUGGaGGCGGGGGCgGAg -3'
miRNA:   3'- aCUACUACU--------AGCUgCCGUUCUUGgCU- -5'
10524 3' -49.6 NC_002687.1 + 139349 0.66 0.999954
Target:  5'- aUGGUaGA-GGUCG-CGGUAgacGGGGCCGAu -3'
miRNA:   3'- -ACUA-CUaCUAGCuGCCGU---UCUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 25252 0.66 0.999952
Target:  5'- gGAUGGUGAUgaagaagcagcaCGACGGCAcAGAcuuguuuACaCGAc -3'
miRNA:   3'- aCUACUACUA------------GCUGCCGU-UCU-------UG-GCU- -5'
10524 3' -49.6 NC_002687.1 + 224340 0.66 0.999921
Target:  5'- gUGGUGGUGG-CGAUGGCGAu-GgCGAu -3'
miRNA:   3'- -ACUACUACUaGCUGCCGUUcuUgGCU- -5'
10524 3' -49.6 NC_002687.1 + 211080 0.66 0.999921
Target:  5'- uUGAUaGA-GGUCGAUGGC--GAAUCGAc -3'
miRNA:   3'- -ACUA-CUaCUAGCUGCCGuuCUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 180130 0.66 0.999898
Target:  5'- aUGAUGAuuuauuUGGUCGACaGC-GGAGCgGGu -3'
miRNA:   3'- -ACUACU------ACUAGCUGcCGuUCUUGgCU- -5'
10524 3' -49.6 NC_002687.1 + 330765 0.66 0.999898
Target:  5'- gGAUGggGGagGAgGGgGAGAAUCGGg -3'
miRNA:   3'- aCUACuaCUagCUgCCgUUCUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 158794 0.66 0.999895
Target:  5'- cGAUG-UGAUgcaCGGCGGCGAcaacgacGGACCGc -3'
miRNA:   3'- aCUACuACUA---GCUGCCGUU-------CUUGGCu -5'
10524 3' -49.6 NC_002687.1 + 234654 0.67 0.999881
Target:  5'- gGAUGAgaugGAU-GACGGCGAuGAucaaaaugaggacagGCCGAu -3'
miRNA:   3'- aCUACUa---CUAgCUGCCGUU-CU---------------UGGCU- -5'
10524 3' -49.6 NC_002687.1 + 292631 0.67 0.999869
Target:  5'- uUGAUGuaccacauUCGcucGCGGCuGGAGCCGAa -3'
miRNA:   3'- -ACUACuacu----AGC---UGCCGuUCUUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 209125 0.67 0.999832
Target:  5'- aGAUGAUGAg-GACGcGCG---GCCGAa -3'
miRNA:   3'- aCUACUACUagCUGC-CGUucuUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 167722 0.67 0.999832
Target:  5'- uUGGUGGUGAUaucgUGACGuGUcAGAugcGCCGAu -3'
miRNA:   3'- -ACUACUACUA----GCUGC-CGuUCU---UGGCU- -5'
10524 3' -49.6 NC_002687.1 + 243796 0.67 0.999832
Target:  5'- -cGUGGUGcUCGAUGGCu-GcGCCGAu -3'
miRNA:   3'- acUACUACuAGCUGCCGuuCuUGGCU- -5'
10524 3' -49.6 NC_002687.1 + 226849 0.67 0.999832
Target:  5'- cGAUGAUGGUgGA-GGCGggGGAGuuGGu -3'
miRNA:   3'- aCUACUACUAgCUgCCGU--UCUUggCU- -5'
10524 3' -49.6 NC_002687.1 + 307634 0.67 0.999733
Target:  5'- cGGUGGUGGUgcuggcacgggCGGCGGCGgugcuggugguGGAgGCCGGa -3'
miRNA:   3'- aCUACUACUA-----------GCUGCCGU-----------UCU-UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.