miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10525 5' -55.6 NC_002687.1 + 297247 0.66 0.982241
Target:  5'- gGCCUggagUCggUCGgUCAGUUCGCUGGGc -3'
miRNA:   3'- aUGGGga--AG--AGCaAGUCGAGCGACCU- -5'
10525 5' -55.6 NC_002687.1 + 132317 0.66 0.980244
Target:  5'- cACCCg-UCUCGUacCAugaacGUUCGCUGGAa -3'
miRNA:   3'- aUGGGgaAGAGCAa-GU-----CGAGCGACCU- -5'
10525 5' -55.6 NC_002687.1 + 303098 0.68 0.950311
Target:  5'- cGCCUaCUUCUCugcaUCAGCUaCGCUGGu -3'
miRNA:   3'- aUGGG-GAAGAGca--AGUCGA-GCGACCu -5'
10525 5' -55.6 NC_002687.1 + 130472 0.68 0.941887
Target:  5'- --gCCUUUCUCGUUCGGUggGUUGGc -3'
miRNA:   3'- augGGGAAGAGCAAGUCGagCGACCu -5'
10525 5' -55.6 NC_002687.1 + 210015 0.68 0.937347
Target:  5'- aUAUCaUCUUCUCGUUguGuCUCGCgGGAu -3'
miRNA:   3'- -AUGG-GGAAGAGCAAguC-GAGCGaCCU- -5'
10525 5' -55.6 NC_002687.1 + 19278 0.99 0.027972
Target:  5'- gUACCCCUcCUCGUUCAGCUCGCUGGAc -3'
miRNA:   3'- -AUGGGGAaGAGCAAGUCGAGCGACCU- -5'
10525 5' -55.6 NC_002687.1 + 220704 0.99 0.027972
Target:  5'- gUACCCCUcCUCGUUCAGCUCGCUGGAc -3'
miRNA:   3'- -AUGGGGAaGAGCAAGUCGAGCGACCU- -5'
10525 5' -55.6 NC_002687.1 + 195113 1.07 0.00869
Target:  5'- gUACCCCUUCUCGUUCAGCUCGCUGGAc -3'
miRNA:   3'- -AUGGGGAAGAGCAAGUCGAGCGACCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.