Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10525 | 5' | -55.6 | NC_002687.1 | + | 297247 | 0.66 | 0.982241 |
Target: 5'- gGCCUggagUCggUCGgUCAGUUCGCUGGGc -3' miRNA: 3'- aUGGGga--AG--AGCaAGUCGAGCGACCU- -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 132317 | 0.66 | 0.980244 |
Target: 5'- cACCCg-UCUCGUacCAugaacGUUCGCUGGAa -3' miRNA: 3'- aUGGGgaAGAGCAa-GU-----CGAGCGACCU- -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 303098 | 0.68 | 0.950311 |
Target: 5'- cGCCUaCUUCUCugcaUCAGCUaCGCUGGu -3' miRNA: 3'- aUGGG-GAAGAGca--AGUCGA-GCGACCu -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 130472 | 0.68 | 0.941887 |
Target: 5'- --gCCUUUCUCGUUCGGUggGUUGGc -3' miRNA: 3'- augGGGAAGAGCAAGUCGagCGACCu -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 210015 | 0.68 | 0.937347 |
Target: 5'- aUAUCaUCUUCUCGUUguGuCUCGCgGGAu -3' miRNA: 3'- -AUGG-GGAAGAGCAAguC-GAGCGaCCU- -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 19278 | 0.99 | 0.027972 |
Target: 5'- gUACCCCUcCUCGUUCAGCUCGCUGGAc -3' miRNA: 3'- -AUGGGGAaGAGCAAGUCGAGCGACCU- -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 220704 | 0.99 | 0.027972 |
Target: 5'- gUACCCCUcCUCGUUCAGCUCGCUGGAc -3' miRNA: 3'- -AUGGGGAaGAGCAAGUCGAGCGACCU- -5' |
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10525 | 5' | -55.6 | NC_002687.1 | + | 195113 | 1.07 | 0.00869 |
Target: 5'- gUACCCCUUCUCGUUCAGCUCGCUGGAc -3' miRNA: 3'- -AUGGGGAAGAGCAAGUCGAGCGACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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