Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 38392 | 0.66 | 0.990299 |
|
Target: 5'- ----aUCGUGGGGGGUUaccuCAUCCaCGGc -3' miRNA: 3'- uugaaAGCGCCCCCUAAc---GUAGG-GCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 56568 | 0.66 | 0.98903 |
|
Target: 5'- cAGCccgUUGaCGGGGGAacUUGUGUCCaCGAc -3' miRNA: 3'- -UUGaa-AGC-GCCCCCU--AACGUAGG-GCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 68157 | 0.66 | 0.986106 |
|
Target: 5'- gGACUUUCauGUGGGGGuggGCcgUCUGAc -3' miRNA: 3'- -UUGAAAG--CGCCCCCuaaCGuaGGGCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 21064 | 0.67 | 0.979386 |
|
Target: 5'- uGGCcUUCGCGGgaugcgaguuguagaGGGGUucucccUGCAUCCUGGa -3' miRNA: 3'- -UUGaAAGCGCC---------------CCCUA------ACGUAGGGCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 101884 | 0.68 | 0.964851 |
|
Target: 5'- aGGCUUUCaucacgaaucaagGCGGGcaagcucucgcaGGGUUGgAUCCCGAu -3' miRNA: 3'- -UUGAAAG-------------CGCCC------------CCUAACgUAGGGCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 4728 | 0.68 | 0.954816 |
|
Target: 5'- --gUUUC-CGGGGGAcaagUGguUCCCGGa -3' miRNA: 3'- uugAAAGcGCCCCCUa---ACguAGGGCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 291070 | 0.71 | 0.880626 |
|
Target: 5'- ------gGCGGGGGAggGCAaCCCGGu -3' miRNA: 3'- uugaaagCGCCCCCUaaCGUaGGGCU- -5' |
|||||||
| 10526 | 5' | -54.8 | NC_002687.1 | + | 198708 | 1.07 | 0.010586 |
|
Target: 5'- cAACUUUCGCGGGGGAUUGCAUCCCGAa -3' miRNA: 3'- -UUGAAAGCGCCCCCUAACGUAGGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home