miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10527 3' -59.5 NC_002687.1 + 214981 0.66 0.92207
Target:  5'- uUCGACaccgGCg-GGGCcGAGGGCGGCGa -3'
miRNA:   3'- cAGCUG----CGagCCCGcCUUCUGCCGUa -5'
10527 3' -59.5 NC_002687.1 + 170161 0.66 0.916809
Target:  5'- uGUCGACGUcggcgUCGgccacgacacGGUGGAccuGGCGGCAUc -3'
miRNA:   3'- -CAGCUGCG-----AGC----------CCGCCUu--CUGCCGUA- -5'
10527 3' -59.5 NC_002687.1 + 63855 0.66 0.893711
Target:  5'- -aCGGCGCUuucguaaaCGGGUGGAcaacuACGGCAa -3'
miRNA:   3'- caGCUGCGA--------GCCCGCCUuc---UGCCGUa -5'
10527 3' -59.5 NC_002687.1 + 48978 0.67 0.887433
Target:  5'- -gCGGCGUgcgCGGGCGuGAGAgGGUGUg -3'
miRNA:   3'- caGCUGCGa--GCCCGCcUUCUgCCGUA- -5'
10527 3' -59.5 NC_002687.1 + 305168 0.67 0.887433
Target:  5'- aGUUGugGCgucggUUGGGCGGAcGuacuuCGGCGUg -3'
miRNA:   3'- -CAGCugCG-----AGCCCGCCUuCu----GCCGUA- -5'
10527 3' -59.5 NC_002687.1 + 76245 0.69 0.763639
Target:  5'- --aGACGCUgGGaccGCGGGcAGAUGGCAUg -3'
miRNA:   3'- cagCUGCGAgCC---CGCCU-UCUGCCGUA- -5'
10527 3' -59.5 NC_002687.1 + 214820 0.7 0.72754
Target:  5'- -gCGACGCUucCGGcGCGGAGGAC-GCGg -3'
miRNA:   3'- caGCUGCGA--GCC-CGCCUUCUGcCGUa -5'
10527 3' -59.5 NC_002687.1 + 309180 0.7 0.709032
Target:  5'- aUCGAUGCUgcGGCGGAGacuGGCGGCGa -3'
miRNA:   3'- cAGCUGCGAgcCCGCCUU---CUGCCGUa -5'
10527 3' -59.5 NC_002687.1 + 201876 0.74 0.475626
Target:  5'- -aCGcGCGCUCGGGCGGGgcAGGCGGg-- -3'
miRNA:   3'- caGC-UGCGAGCCCGCCU--UCUGCCgua -5'
10527 3' -59.5 NC_002687.1 + 200964 0.76 0.416306
Target:  5'- -gCG-CGCUCGGGCGGGgcAGGCgGGCGUg -3'
miRNA:   3'- caGCuGCGAGCCCGCCU--UCUG-CCGUA- -5'
10527 3' -59.5 NC_002687.1 + 332253 0.76 0.392303
Target:  5'- -gCGGCGCUUGGGCGuGGAGgcgauuGCGGCAUc -3'
miRNA:   3'- caGCUGCGAGCCCGC-CUUC------UGCCGUA- -5'
10527 3' -59.5 NC_002687.1 + 200554 1.05 0.005889
Target:  5'- cGUCGACGCUCGGGCGGAAGACGGCAUc -3'
miRNA:   3'- -CAGCUGCGAGCCCGCCUUCUGCCGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.