miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10527 5' -48.1 NC_002687.1 + 77522 0.66 0.999997
Target:  5'- ---aGUGUGCUcggaacccuugUUCAUGCAGaAUGUCGa -3'
miRNA:   3'- cgugCGCACGA-----------AAGUAUGUC-UGUAGC- -5'
10527 5' -48.1 NC_002687.1 + 277504 0.66 0.999997
Target:  5'- cGCGCGC-UGCc-UCGUcgGCGGcCAUCGg -3'
miRNA:   3'- -CGUGCGcACGaaAGUA--UGUCuGUAGC- -5'
10527 5' -48.1 NC_002687.1 + 257280 0.66 0.999996
Target:  5'- aGCcuUGCGUuuuaCUUUCuagGUACGGACGUCGa -3'
miRNA:   3'- -CGu-GCGCAc---GAAAG---UAUGUCUGUAGC- -5'
10527 5' -48.1 NC_002687.1 + 67609 0.66 0.999996
Target:  5'- aGgAgGCG-GCgcagUCGUGCGGACAgUCGa -3'
miRNA:   3'- -CgUgCGCaCGaa--AGUAUGUCUGU-AGC- -5'
10527 5' -48.1 NC_002687.1 + 308005 0.66 0.999995
Target:  5'- uGCACGCGUcgGCUUUaCAccgcccgucaacuggUGCAG-CAUCc -3'
miRNA:   3'- -CGUGCGCA--CGAAA-GU---------------AUGUCuGUAGc -5'
10527 5' -48.1 NC_002687.1 + 317181 0.66 0.999994
Target:  5'- uCACGCGcGCUguUUCAUGCAc-CAUCa -3'
miRNA:   3'- cGUGCGCaCGA--AAGUAUGUcuGUAGc -5'
10527 5' -48.1 NC_002687.1 + 9671 0.66 0.999994
Target:  5'- aGUACGagggggaucUGUGCUUUCGUACAugcgauagcGACAUUc -3'
miRNA:   3'- -CGUGC---------GCACGAAAGUAUGU---------CUGUAGc -5'
10527 5' -48.1 NC_002687.1 + 124877 0.66 0.999994
Target:  5'- cGC-CGuCGUGCca-CAUGCAGACGcCGu -3'
miRNA:   3'- -CGuGC-GCACGaaaGUAUGUCUGUaGC- -5'
10527 5' -48.1 NC_002687.1 + 283782 0.66 0.999994
Target:  5'- gGCAUuuGUGUUUUCAUacccgaACAGugGUCc -3'
miRNA:   3'- -CGUGcgCACGAAAGUA------UGUCugUAGc -5'
10527 5' -48.1 NC_002687.1 + 279779 0.66 0.999992
Target:  5'- aGCACGCaagGCU---AUGCAGGCAUa- -3'
miRNA:   3'- -CGUGCGca-CGAaagUAUGUCUGUAgc -5'
10527 5' -48.1 NC_002687.1 + 214554 0.66 0.999992
Target:  5'- aGCACGCaUGg-UUCAgccGCAGGCAUgGg -3'
miRNA:   3'- -CGUGCGcACgaAAGUa--UGUCUGUAgC- -5'
10527 5' -48.1 NC_002687.1 + 329344 0.66 0.999992
Target:  5'- cCACgGCGUGgaUauaUCAUccGCAGGCGUCa -3'
miRNA:   3'- cGUG-CGCACgaA---AGUA--UGUCUGUAGc -5'
10527 5' -48.1 NC_002687.1 + 200436 0.66 0.999989
Target:  5'- uGCGCGCccucGUGCgccUCGgUGCAGACGcaaaUCGc -3'
miRNA:   3'- -CGUGCG----CACGaa-AGU-AUGUCUGU----AGC- -5'
10527 5' -48.1 NC_002687.1 + 69454 0.67 0.999985
Target:  5'- aGCGCGUGcuccGCUUUC--GCAGGCGgcuUCGu -3'
miRNA:   3'- -CGUGCGCa---CGAAAGuaUGUCUGU---AGC- -5'
10527 5' -48.1 NC_002687.1 + 84498 0.67 0.999983
Target:  5'- cGCACGCcgagcuugaccaggGUgGCUUcacgcUCgGUACAGACGUCa -3'
miRNA:   3'- -CGUGCG--------------CA-CGAA-----AG-UAUGUCUGUAGc -5'
10527 5' -48.1 NC_002687.1 + 163147 0.67 0.999979
Target:  5'- cGCAUGCGUGUgaaUCcgGCgAGACAg-- -3'
miRNA:   3'- -CGUGCGCACGaa-AGuaUG-UCUGUagc -5'
10527 5' -48.1 NC_002687.1 + 200937 0.67 0.999972
Target:  5'- aGCACGCGUGCa-UCAa--AGGCGUg- -3'
miRNA:   3'- -CGUGCGCACGaaAGUaugUCUGUAgc -5'
10527 5' -48.1 NC_002687.1 + 204601 0.67 0.999972
Target:  5'- uCACG-GUGCacgacUCGUccGCAGACGUCGu -3'
miRNA:   3'- cGUGCgCACGaa---AGUA--UGUCUGUAGC- -5'
10527 5' -48.1 NC_002687.1 + 270125 0.67 0.999972
Target:  5'- uGUGCGCGUGaCUggCGUGaAGGCAggUCGg -3'
miRNA:   3'- -CGUGCGCAC-GAaaGUAUgUCUGU--AGC- -5'
10527 5' -48.1 NC_002687.1 + 57673 0.67 0.999963
Target:  5'- aGC-CGUGUGCUaUCG-AUAGACAaCGg -3'
miRNA:   3'- -CGuGCGCACGAaAGUaUGUCUGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.