miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1053 3' -54.3 NC_000929.1 + 19052 0.66 0.544344
Target:  5'- --aGGCAGCAGUgaagGCGCUCGGCa---- -3'
miRNA:   3'- uuaUUGUCGUCG----CGCGGGUCGgaaaa -5'
1053 3' -54.3 NC_000929.1 + 2361 0.66 0.532841
Target:  5'- -cUGACGGgaGGCGCGCCCAaucGCUa--- -3'
miRNA:   3'- uuAUUGUCg-UCGCGCGGGU---CGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 1854 0.68 0.444618
Target:  5'- --cAAguGCAGC-CGCCCAGUCa--- -3'
miRNA:   3'- uuaUUguCGUCGcGCGGGUCGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 8725 0.68 0.423848
Target:  5'- cAUGACGGCGGCuuaUGCCCAuGCCa--- -3'
miRNA:   3'- uUAUUGUCGUCGc--GCGGGU-CGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 11097 0.69 0.36519
Target:  5'- cGUGGCGGguGC-UGUCCAGCCUg-- -3'
miRNA:   3'- uUAUUGUCguCGcGCGGGUCGGAaaa -5'
1053 3' -54.3 NC_000929.1 + 11587 0.7 0.304166
Target:  5'- --gAGCAGCAGCGCcaccGCCCGGUUc--- -3'
miRNA:   3'- uuaUUGUCGUCGCG----CGGGUCGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 18372 0.72 0.224613
Target:  5'- --gGACGGCGGCG-GCCCAGCa---- -3'
miRNA:   3'- uuaUUGUCGUCGCgCGGGUCGgaaaa -5'
1053 3' -54.3 NC_000929.1 + 9590 0.73 0.206218
Target:  5'- --aAACAuCAGCGCGCgCCAGCCa--- -3'
miRNA:   3'- uuaUUGUcGUCGCGCG-GGUCGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 35484 0.73 0.200382
Target:  5'- -cUGGCGGCAGCaaGUCCAGCCa--- -3'
miRNA:   3'- uuAUUGUCGUCGcgCGGGUCGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 17530 0.77 0.110743
Target:  5'- gGAUGACAGCAGCGC-CgCAGCCa--- -3'
miRNA:   3'- -UUAUUGUCGUCGCGcGgGUCGGaaaa -5'
1053 3' -54.3 NC_000929.1 + 5436 1.04 0.001061
Target:  5'- gAAUAACAGCAGCGCGCCCAGCCUUUUg -3'
miRNA:   3'- -UUAUUGUCGUCGCGCGGGUCGGAAAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.