miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10531 3' -53.8 NC_002687.1 + 299260 0.66 0.997123
Target:  5'- aGGAUcaAgGACGUCcagcgGCGGGCGAcgaggGUCGa -3'
miRNA:   3'- gCUUG--UgCUGCAGa----CGCCUGCU-----CAGC- -5'
10531 3' -53.8 NC_002687.1 + 81135 0.66 0.996651
Target:  5'- gCGAAC-CGACGUUUGaaGAgaGAGUCa -3'
miRNA:   3'- -GCUUGuGCUGCAGACgcCUg-CUCAGc -5'
10531 3' -53.8 NC_002687.1 + 158752 0.66 0.996651
Target:  5'- gCGGACGCGGgagcugaugaaUGUUgUGUGGGCGGGUgGg -3'
miRNA:   3'- -GCUUGUGCU-----------GCAG-ACGCCUGCUCAgC- -5'
10531 3' -53.8 NC_002687.1 + 260057 0.66 0.996651
Target:  5'- aCGAGCACaGGa-UCUGC-GugGGGUCGa -3'
miRNA:   3'- -GCUUGUG-CUgcAGACGcCugCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 111252 0.67 0.99324
Target:  5'- uCGuACaACGACGUCUG-GGuauccuGCGAGUUGg -3'
miRNA:   3'- -GCuUG-UGCUGCAGACgCC------UGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 204634 0.68 0.991268
Target:  5'- uGGGCGacaaGGCGUUguucaCGGAUGAGUCGu -3'
miRNA:   3'- gCUUGUg---CUGCAGac---GCCUGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 21076 0.68 0.990124
Target:  5'- aCGAcaaGCACGugGcCUucGCGGgauGCGAGUUGu -3'
miRNA:   3'- -GCU---UGUGCugCaGA--CGCC---UGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 197079 0.68 0.990124
Target:  5'- uGAgGCACGugGcCuccgUGCGGcACGAGUUGa -3'
miRNA:   3'- gCU-UGUGCugCaG----ACGCC-UGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 222670 0.68 0.990124
Target:  5'- uGAgGCACGugGcCuccgUGCGGcACGAGUUGa -3'
miRNA:   3'- gCU-UGUGCugCaG----ACGCC-UGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 27201 0.68 0.988867
Target:  5'- -cGACACGGuCGcUgaGCGGcGCGAGUCGa -3'
miRNA:   3'- gcUUGUGCU-GC-AgaCGCC-UGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 138188 0.68 0.988867
Target:  5'- uGGACGCGAauccaaaGUCUGCGauuuuGACGuuGUCGu -3'
miRNA:   3'- gCUUGUGCUg------CAGACGC-----CUGCu-CAGC- -5'
10531 3' -53.8 NC_002687.1 + 238340 0.68 0.988054
Target:  5'- gGAGCugGAguucgugccagugauCGUC-GUGGACGAGUUc -3'
miRNA:   3'- gCUUGugCU---------------GCAGaCGCCUGCUCAGc -5'
10531 3' -53.8 NC_002687.1 + 243499 0.68 0.985981
Target:  5'- gGAGCAUGGgGUg-GCGGACGGaUCGa -3'
miRNA:   3'- gCUUGUGCUgCAgaCGCCUGCUcAGC- -5'
10531 3' -53.8 NC_002687.1 + 262666 0.68 0.984339
Target:  5'- -cAACaACGACGUC-GCGGcccugcACGGGUCGu -3'
miRNA:   3'- gcUUG-UGCUGCAGaCGCC------UGCUCAGC- -5'
10531 3' -53.8 NC_002687.1 + 168545 0.69 0.980621
Target:  5'- gCGAACugGuacCGUCUGaagaaGGACGcccuGGUCGc -3'
miRNA:   3'- -GCUUGugCu--GCAGACg----CCUGC----UCAGC- -5'
10531 3' -53.8 NC_002687.1 + 332350 0.69 0.980621
Target:  5'- uCGggUACGGCGgaguccUUGUGGGCGAGg-- -3'
miRNA:   3'- -GCuuGUGCUGCa-----GACGCCUGCUCagc -5'
10531 3' -53.8 NC_002687.1 + 242677 0.69 0.98042
Target:  5'- ----gGCGGCGugcaucagucuugUCUGCGGACGucGGUCGa -3'
miRNA:   3'- gcuugUGCUGC-------------AGACGCCUGC--UCAGC- -5'
10531 3' -53.8 NC_002687.1 + 240797 0.69 0.978533
Target:  5'- --cGCACGACuGUCU-CGGGgGAGUCa -3'
miRNA:   3'- gcuUGUGCUG-CAGAcGCCUgCUCAGc -5'
10531 3' -53.8 NC_002687.1 + 123078 0.69 0.976282
Target:  5'- uGGACGuCGACGUCa-CGGACGGGagGg -3'
miRNA:   3'- gCUUGU-GCUGCAGacGCCUGCUCagC- -5'
10531 3' -53.8 NC_002687.1 + 166247 0.7 0.971269
Target:  5'- uGAugGCGGCGggcuUCUGUGGAuccuCGcAGUCGa -3'
miRNA:   3'- gCUugUGCUGC----AGACGCCU----GC-UCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.