miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10531 5' -51.8 NC_002687.1 + 309702 0.66 0.998895
Target:  5'- uGCGgucGCUCAUgCGccGGACAGCGCCc- -3'
miRNA:   3'- uUGC---UGAGUAgGCa-CUUGUUGCGGaa -5'
10531 5' -51.8 NC_002687.1 + 165262 0.66 0.998694
Target:  5'- cACGACUCcgacggacgauacguUCCaGUGGACuuCGCCUUu -3'
miRNA:   3'- uUGCUGAGu--------------AGG-CACUUGuuGCGGAA- -5'
10531 5' -51.8 NC_002687.1 + 112741 0.66 0.9981
Target:  5'- cGCGACggCGUuuGUGAAuCAACGCa-- -3'
miRNA:   3'- uUGCUGa-GUAggCACUU-GUUGCGgaa -5'
10531 5' -51.8 NC_002687.1 + 294937 0.66 0.997746
Target:  5'- cAugGugUUG-CCGUucucGAGCAACGCCUg -3'
miRNA:   3'- -UugCugAGUaGGCA----CUUGUUGCGGAa -5'
10531 5' -51.8 NC_002687.1 + 133208 0.67 0.994275
Target:  5'- uGACGACUCcauGUCCuUGAugAGCGCg-- -3'
miRNA:   3'- -UUGCUGAG---UAGGcACUugUUGCGgaa -5'
10531 5' -51.8 NC_002687.1 + 76841 0.68 0.992441
Target:  5'- cGCGcCUCA-CCGUGAACAACGaCa- -3'
miRNA:   3'- uUGCuGAGUaGGCACUUGUUGCgGaa -5'
10531 5' -51.8 NC_002687.1 + 116074 0.68 0.991363
Target:  5'- cGAUGAgUCcgCCGUGAugAugacaaguggacACGCCUUg -3'
miRNA:   3'- -UUGCUgAGuaGGCACUugU------------UGCGGAA- -5'
10531 5' -51.8 NC_002687.1 + 156601 0.68 0.991363
Target:  5'- gAugGGCUCGUCCG---ACGACGCUc- -3'
miRNA:   3'- -UugCUGAGUAGGCacuUGUUGCGGaa -5'
10531 5' -51.8 NC_002687.1 + 312435 0.68 0.991363
Target:  5'- aGACGuguACUCGUUCGUu-ACAACGCCa- -3'
miRNA:   3'- -UUGC---UGAGUAGGCAcuUGUUGCGGaa -5'
10531 5' -51.8 NC_002687.1 + 56715 0.68 0.988845
Target:  5'- gAGCGAUUCGUcccCCGUGAACuuCGCg-- -3'
miRNA:   3'- -UUGCUGAGUA---GGCACUUGuuGCGgaa -5'
10531 5' -51.8 NC_002687.1 + 237841 0.69 0.987389
Target:  5'- cGGCGGUUCgAUCCGUGGAUGAUGUCUUu -3'
miRNA:   3'- -UUGCUGAG-UAGGCACUUGUUGCGGAA- -5'
10531 5' -51.8 NC_002687.1 + 203653 0.69 0.984042
Target:  5'- gGACGugUCGUCCGacagcgUGAuCGugGCCg- -3'
miRNA:   3'- -UUGCugAGUAGGC------ACUuGUugCGGaa -5'
10531 5' -51.8 NC_002687.1 + 206477 0.7 0.969951
Target:  5'- uAGCGAUgaacggGUCCGUGGACcACGCCg- -3'
miRNA:   3'- -UUGCUGag----UAGGCACUUGuUGCGGaa -5'
10531 5' -51.8 NC_002687.1 + 204177 0.72 0.921351
Target:  5'- gAACGACUuguuuucaacgggagCGUCCGUGGAgGugGCCa- -3'
miRNA:   3'- -UUGCUGA---------------GUAGGCACUUgUugCGGaa -5'
10531 5' -51.8 NC_002687.1 + 204265 1.04 0.027293
Target:  5'- gAACGACUCAUCCGUGAACAACGCCUUg -3'
miRNA:   3'- -UUGCUGAGUAGGCACUUGUUGCGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.