Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 2177 | 0.66 | 0.897352 |
|
Target: 5'- -cCCUCcgaaCGCGCCGUCCUGUuuGUUGa -3' miRNA: 3'- aaGGAGac--GCGCGGCAGGGCGc-UAAC- -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 132036 | 0.67 | 0.871387 |
|
Target: 5'- uUUCCUCUGUGCcCUGaCCuCGCGAa-- -3' miRNA: 3'- -AAGGAGACGCGcGGCaGG-GCGCUaac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 323442 | 0.67 | 0.864414 |
|
Target: 5'- --aCUCUaGCGUGCCGuUCuuGCGGUa- -3' miRNA: 3'- aagGAGA-CGCGCGGC-AGggCGCUAac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 145692 | 0.67 | 0.864414 |
|
Target: 5'- -aCUgCUGCGcCGUCGUCaCCGCGAg-- -3' miRNA: 3'- aaGGaGACGC-GCGGCAG-GGCGCUaac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 294748 | 0.67 | 0.857257 |
|
Target: 5'- cUCCcCgcgcGCGCGCCG-CUCGCGAg-- -3' miRNA: 3'- aAGGaGa---CGCGCGGCaGGGCGCUaac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 199126 | 0.67 | 0.857257 |
|
Target: 5'- -cCCUCUGCGCGgCGUCuaGCu---- -3' miRNA: 3'- aaGGAGACGCGCgGCAGggCGcuaac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 81168 | 0.68 | 0.842413 |
|
Target: 5'- uUUUCUUUGCaGUGCCGUgcauuaccugcgCCCGCGAa-- -3' miRNA: 3'- -AAGGAGACG-CGCGGCA------------GGGCGCUaac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 253606 | 0.69 | 0.776831 |
|
Target: 5'- -aCUUCUGCGCG-CGUUgaCCGCGAUa- -3' miRNA: 3'- aaGGAGACGCGCgGCAG--GGCGCUAac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 284717 | 0.69 | 0.750165 |
|
Target: 5'- -gCCUCUG-GUGCUGUCaCUGCGAUg- -3' miRNA: 3'- aaGGAGACgCGCGGCAG-GGCGCUAac -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 248540 | 0.72 | 0.618145 |
|
Target: 5'- uUUUCUUUGCGC-CCGUCCCGC--UUGg -3' miRNA: 3'- -AAGGAGACGCGcGGCAGGGCGcuAAC- -5' |
|||||||
| 10532 | 3' | -59.4 | NC_002687.1 | + | 208043 | 1.06 | 0.004698 |
|
Target: 5'- cUUCCUCUGCGCGCCGUCCCGCGAUUGg -3' miRNA: 3'- -AAGGAGACGCGCGGCAGGGCGCUAAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home