miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10532 5' -54.6 NC_002687.1 + 133094 0.66 0.992422
Target:  5'- -aUAGGCGaacggaggaGAGAcuGCGGCCCGcCGAAa -3'
miRNA:   3'- uaGUUCGCg--------CUCU--UGCUGGGC-GCUUc -5'
10532 5' -54.6 NC_002687.1 + 319598 0.66 0.992422
Target:  5'- uGUCGGGagcguuCGCGAGAgaagcACGGCCUGgGAGa -3'
miRNA:   3'- -UAGUUC------GCGCUCU-----UGCUGGGCgCUUc -5'
10532 5' -54.6 NC_002687.1 + 261317 0.66 0.992422
Target:  5'- uUCGGGCgGCGGcAACGGCaUgGCGAAGg -3'
miRNA:   3'- uAGUUCG-CGCUcUUGCUG-GgCGCUUC- -5'
10532 5' -54.6 NC_002687.1 + 309346 0.66 0.992422
Target:  5'- uGUCcGGCGCauGAGCGACCgcauCGCGGAu -3'
miRNA:   3'- -UAGuUCGCGcuCUUGCUGG----GCGCUUc -5'
10532 5' -54.6 NC_002687.1 + 208723 0.66 0.991379
Target:  5'- ---uGGUGcCGAGAACGACCCcagagacccuGCGGAc -3'
miRNA:   3'- uaguUCGC-GCUCUUGCUGGG----------CGCUUc -5'
10532 5' -54.6 NC_002687.1 + 32940 0.66 0.990226
Target:  5'- -----aUGCGAGAuacacugaAUGACCCGCGAAc -3'
miRNA:   3'- uaguucGCGCUCU--------UGCUGGGCGCUUc -5'
10532 5' -54.6 NC_002687.1 + 249109 0.66 0.988955
Target:  5'- --aGAGCGCGuGAccucuucuACGGCCUGUGGGu -3'
miRNA:   3'- uagUUCGCGCuCU--------UGCUGGGCGCUUc -5'
10532 5' -54.6 NC_002687.1 + 123579 0.66 0.987559
Target:  5'- cUUGAGCGCGAGcgucGCGugUgGCGAc- -3'
miRNA:   3'- uAGUUCGCGCUCu---UGCugGgCGCUuc -5'
10532 5' -54.6 NC_002687.1 + 115557 0.67 0.98603
Target:  5'- -gCGGGCGuCGAGuACGACCC-CGGu- -3'
miRNA:   3'- uaGUUCGC-GCUCuUGCUGGGcGCUuc -5'
10532 5' -54.6 NC_002687.1 + 208639 0.67 0.984362
Target:  5'- cGUCGaggacguuGGUGcCGAGAACGACCCcagggacccuGCGGAc -3'
miRNA:   3'- -UAGU--------UCGC-GCUCUUGCUGGG----------CGCUUc -5'
10532 5' -54.6 NC_002687.1 + 109191 0.67 0.984362
Target:  5'- gAUCAAGC-UGGGcGACGACgCCGUGAGu -3'
miRNA:   3'- -UAGUUCGcGCUC-UUGCUG-GGCGCUUc -5'
10532 5' -54.6 NC_002687.1 + 244052 0.67 0.984362
Target:  5'- ----uGUGCGAGgucgGugGugCCGCGAGGc -3'
miRNA:   3'- uaguuCGCGCUC----UugCugGGCGCUUC- -5'
10532 5' -54.6 NC_002687.1 + 275466 0.67 0.98329
Target:  5'- gGUCGAGCGCGuGGggaucgaggggugcgGCGGCUuCGaCGGAGg -3'
miRNA:   3'- -UAGUUCGCGCuCU---------------UGCUGG-GC-GCUUC- -5'
10532 5' -54.6 NC_002687.1 + 100334 0.67 0.982546
Target:  5'- -cCGAGUGguUGAGAGCGGCCCGaacaCGAAc -3'
miRNA:   3'- uaGUUCGC--GCUCUUGCUGGGC----GCUUc -5'
10532 5' -54.6 NC_002687.1 + 286212 0.67 0.982546
Target:  5'- -aCcAGCGCGAGGuUGACUCGCGc-- -3'
miRNA:   3'- uaGuUCGCGCUCUuGCUGGGCGCuuc -5'
10532 5' -54.6 NC_002687.1 + 42516 0.67 0.98037
Target:  5'- gAUCGAGUucaugaaGCGGGuuGCuGACCCGaCGAGGa -3'
miRNA:   3'- -UAGUUCG-------CGCUCu-UG-CUGGGC-GCUUC- -5'
10532 5' -54.6 NC_002687.1 + 77261 0.67 0.976145
Target:  5'- --gGAGUGgGGGGACGACuuGCGccGa -3'
miRNA:   3'- uagUUCGCgCUCUUGCUGggCGCuuC- -5'
10532 5' -54.6 NC_002687.1 + 168924 0.68 0.968173
Target:  5'- uGUCcaGAGCGuCGAGAACGAgCUG-GAGGa -3'
miRNA:   3'- -UAG--UUCGC-GCUCUUGCUgGGCgCUUC- -5'
10532 5' -54.6 NC_002687.1 + 115852 0.7 0.923314
Target:  5'- uAUCGAcaaCGUGAGGACGA-CCGUGAAGa -3'
miRNA:   3'- -UAGUUc--GCGCUCUUGCUgGGCGCUUC- -5'
10532 5' -54.6 NC_002687.1 + 145705 0.72 0.867103
Target:  5'- cGUCAc-CGCGAGAGCGACCCcaccuGgGGAGa -3'
miRNA:   3'- -UAGUucGCGCUCUUGCUGGG-----CgCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.