miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10533 3' -51.4 NC_002687.1 + 208439 1.09 0.018156
Target:  5'- cCCCAAGGACGUCAAGGACGAUGGAAAg -3'
miRNA:   3'- -GGGUUCCUGCAGUUCCUGCUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 208292 1.09 0.018156
Target:  5'- cCCCAAGGACGUCAAGGACGAUGGAAAg -3'
miRNA:   3'- -GGGUUCCUGCAGUUCCUGCUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 208341 0.92 0.173924
Target:  5'- aCCAAGGACcUCAAGGACGAUGGGAGc -3'
miRNA:   3'- gGGUUCCUGcAGUUCCUGCUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 208488 0.92 0.173924
Target:  5'- aCCAAGGACcUCAAGGACGAUGGGAGc -3'
miRNA:   3'- gGGUUCCUGcAGUUCCUGCUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 262907 0.77 0.78425
Target:  5'- gCCGAGGACacgagaguuguggCGAGGAUGAUGGAGAg -3'
miRNA:   3'- gGGUUCCUGca-----------GUUCCUGCUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 208619 0.76 0.848428
Target:  5'- aCCAAGGACcUCAAGGACGAcgucgaGGAc- -3'
miRNA:   3'- gGGUUCCUGcAGUUCCUGCUa-----CCUuu -5'
10533 3' -51.4 NC_002687.1 + 130824 0.74 0.904294
Target:  5'- aCCAagaaauGGGACGUCAAGGACGAc----- -3'
miRNA:   3'- gGGU------UCCUGCAGUUCCUGCUaccuuu -5'
10533 3' -51.4 NC_002687.1 + 102664 0.74 0.916086
Target:  5'- aCCCucGGGACGgaaaCGacgucgacaacaAGGACGAUGGAGAc -3'
miRNA:   3'- -GGGu-UCCUGCa---GU------------UCCUGCUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 135705 0.74 0.92164
Target:  5'- uCCCGAGGACaaaGUCAAccccGGGCuGAUGGAc- -3'
miRNA:   3'- -GGGUUCCUG---CAGUU----CCUG-CUACCUuu -5'
10533 3' -51.4 NC_002687.1 + 92789 0.73 0.936927
Target:  5'- gUCGAGGACGUCGucGAUGAUGGu-- -3'
miRNA:   3'- gGGUUCCUGCAGUucCUGCUACCuuu -5'
10533 3' -51.4 NC_002687.1 + 87543 0.73 0.936927
Target:  5'- cUCCAAGGGCGcCAAGGGCGccaaGGGc- -3'
miRNA:   3'- -GGGUUCCUGCaGUUCCUGCua--CCUuu -5'
10533 3' -51.4 NC_002687.1 + 148469 0.71 0.973471
Target:  5'- -gCAAGGGgGUCAAGGuuGGUGGGc- -3'
miRNA:   3'- ggGUUCCUgCAGUUCCugCUACCUuu -5'
10533 3' -51.4 NC_002687.1 + 284824 0.71 0.980529
Target:  5'- aCCUggGGACGUaaaaggggauccCGGGGACcgGGUGGAu- -3'
miRNA:   3'- -GGGuuCCUGCA------------GUUCCUG--CUACCUuu -5'
10533 3' -51.4 NC_002687.1 + 316015 0.7 0.986081
Target:  5'- gCCGgugGGGACGgUggGGACGGUGGu-- -3'
miRNA:   3'- gGGU---UCCUGCaGuuCCUGCUACCuuu -5'
10533 3' -51.4 NC_002687.1 + 22355 0.7 0.986081
Target:  5'- gCCCuuuuAAGGaACGUcCAAGGACaaucgGAUGGAAAu -3'
miRNA:   3'- -GGG----UUCC-UGCA-GUUCCUG-----CUACCUUU- -5'
10533 3' -51.4 NC_002687.1 + 30581 0.7 0.986081
Target:  5'- gCCGAGGACaGUCAAcGuGGCGuUGGAAc -3'
miRNA:   3'- gGGUUCCUG-CAGUU-C-CUGCuACCUUu -5'
10533 3' -51.4 NC_002687.1 + 123073 0.7 0.989046
Target:  5'- gCUCAuGGACGUCGAcgucacGGACGGgagGGggGc -3'
miRNA:   3'- -GGGUuCCUGCAGUU------CCUGCUa--CCuuU- -5'
10533 3' -51.4 NC_002687.1 + 199813 0.69 0.99033
Target:  5'- cCUCGAcGGACG-CGAGGA-GGUGGAGg -3'
miRNA:   3'- -GGGUU-CCUGCaGUUCCUgCUACCUUu -5'
10533 3' -51.4 NC_002687.1 + 303703 0.69 0.992544
Target:  5'- -aCAAGGAUuUCGGGGugGGUGGc-- -3'
miRNA:   3'- ggGUUCCUGcAGUUCCugCUACCuuu -5'
10533 3' -51.4 NC_002687.1 + 300604 0.69 0.992544
Target:  5'- gCCCAAGuGGCGgaaGucGGCGGUGGAAGc -3'
miRNA:   3'- -GGGUUC-CUGCag-UucCUGCUACCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.