miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10533 5' -54.3 NC_002687.1 + 110596 0.66 0.994596
Target:  5'- cGCCGugAACGACGCaucugucgugcAGGugcauguacgaaauGCCUCGc -3'
miRNA:   3'- aCGGCugUUGCUGUGgu---------UCC--------------UGGAGU- -5'
10533 5' -54.3 NC_002687.1 + 104846 0.66 0.994207
Target:  5'- gGCCGAUAAaaucacCGGCcuCCAAGGGUCUCu -3'
miRNA:   3'- aCGGCUGUU------GCUGu-GGUUCCUGGAGu -5'
10533 5' -54.3 NC_002687.1 + 118462 0.66 0.994207
Target:  5'- cGCCG-CAGCGAagcagaguCACCGAGGAauauUUUCGc -3'
miRNA:   3'- aCGGCuGUUGCU--------GUGGUUCCU----GGAGU- -5'
10533 5' -54.3 NC_002687.1 + 46981 0.66 0.994207
Target:  5'- cGCCGAgGugGACA---AGGACC-CGa -3'
miRNA:   3'- aCGGCUgUugCUGUgguUCCUGGaGU- -5'
10533 5' -54.3 NC_002687.1 + 81848 0.66 0.994207
Target:  5'- gUGCCGACGGCGACAac-GGGAa---- -3'
miRNA:   3'- -ACGGCUGUUGCUGUgguUCCUggagu -5'
10533 5' -54.3 NC_002687.1 + 213309 0.66 0.993363
Target:  5'- cGCgGACugUGGUAUCGGGGACUUCGu -3'
miRNA:   3'- aCGgCUGuuGCUGUGGUUCCUGGAGU- -5'
10533 5' -54.3 NC_002687.1 + 2210 0.66 0.993363
Target:  5'- -cCUGGCGGCGAUACaCGAGGAUUaagUCAg -3'
miRNA:   3'- acGGCUGUUGCUGUG-GUUCCUGG---AGU- -5'
10533 5' -54.3 NC_002687.1 + 260666 0.66 0.993363
Target:  5'- uUGCCGcaACAACGGCcucuuuACgGGGGGgCUCGc -3'
miRNA:   3'- -ACGGC--UGUUGCUG------UGgUUCCUgGAGU- -5'
10533 5' -54.3 NC_002687.1 + 257610 0.66 0.993363
Target:  5'- gGUUcACGGCGGCugGCCGAGGACCc-- -3'
miRNA:   3'- aCGGcUGUUGCUG--UGGUUCCUGGagu -5'
10533 5' -54.3 NC_002687.1 + 252383 0.66 0.993363
Target:  5'- aGCCGACGguuaugugagguACGAUACCGAgaaaacgccGGuaccCCUCGg -3'
miRNA:   3'- aCGGCUGU------------UGCUGUGGUU---------CCu---GGAGU- -5'
10533 5' -54.3 NC_002687.1 + 308231 0.66 0.993363
Target:  5'- cGCCGuCAGCuaaaGugACCGAGGGCgC-CAa -3'
miRNA:   3'- aCGGCuGUUG----CugUGGUUCCUG-GaGU- -5'
10533 5' -54.3 NC_002687.1 + 109196 0.66 0.99281
Target:  5'- aGCUgGGCGACGACGCCGugaGugaaauccgaucgauGGugCUCAg -3'
miRNA:   3'- aCGG-CUGUUGCUGUGGU---U---------------CCugGAGU- -5'
10533 5' -54.3 NC_002687.1 + 332037 0.66 0.992422
Target:  5'- gGCUGGCcauGCGcCGCCuuGAGGACCa-- -3'
miRNA:   3'- aCGGCUGu--UGCuGUGG--UUCCUGGagu -5'
10533 5' -54.3 NC_002687.1 + 238217 0.66 0.992422
Target:  5'- cGCCGGCAACGugAaagacaucauCCAcGGAUCg-- -3'
miRNA:   3'- aCGGCUGUUGCugU----------GGUuCCUGGagu -5'
10533 5' -54.3 NC_002687.1 + 330725 0.66 0.992422
Target:  5'- cUGCCGcGC-ACGACGCCuauguugggaGAGGAUCgagCAa -3'
miRNA:   3'- -ACGGC-UGuUGCUGUGG----------UUCCUGGa--GU- -5'
10533 5' -54.3 NC_002687.1 + 131005 0.66 0.992121
Target:  5'- gUGCUG-CAagaagaagguucugACGACACagaugaagucgaCGAGGGCCUCGa -3'
miRNA:   3'- -ACGGCuGU--------------UGCUGUG------------GUUCCUGGAGU- -5'
10533 5' -54.3 NC_002687.1 + 109198 0.66 0.991379
Target:  5'- aGCgCGACGcCGGCACCAAaauGGuuCCUUAc -3'
miRNA:   3'- aCG-GCUGUuGCUGUGGUU---CCu-GGAGU- -5'
10533 5' -54.3 NC_002687.1 + 270211 0.66 0.991379
Target:  5'- cGCCGGCAACcugGAUACgGAGuGCUUCu -3'
miRNA:   3'- aCGGCUGUUG---CUGUGgUUCcUGGAGu -5'
10533 5' -54.3 NC_002687.1 + 248491 0.66 0.991379
Target:  5'- cGCCGAUGACGucACACCGucauucAGGACa--- -3'
miRNA:   3'- aCGGCUGUUGC--UGUGGU------UCCUGgagu -5'
10533 5' -54.3 NC_002687.1 + 62761 0.66 0.991379
Target:  5'- gUGCUGGCGAaacCGAgGuCC-AGGGCCUCc -3'
miRNA:   3'- -ACGGCUGUU---GCUgU-GGuUCCUGGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.