Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10534 | 3' | -51.4 | NC_002687.1 | + | 231473 | 0.66 | 0.999585 |
Target: 5'- aCCAAGGACGaCGGGGACa------- -3' miRNA: 3'- gGGUUCCUGCaGUUCCUGcuaccuuu -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 85663 | 0.66 | 0.999585 |
Target: 5'- gUCC-GGGugG-UAAGGACGG-GGAAAa -3' miRNA: 3'- -GGGuUCCugCaGUUCCUGCUaCCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 75404 | 0.66 | 0.999488 |
Target: 5'- gCCCGAGGAgcuaUGUUcGGGAUuuUGGGAGg -3' miRNA: 3'- -GGGUUCCU----GCAGuUCCUGcuACCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 11109 | 0.66 | 0.999372 |
Target: 5'- -aCAAGGACaa-GAGGACGAggccGGAAc -3' miRNA: 3'- ggGUUCCUGcagUUCCUGCUa---CCUUu -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 211520 | 0.66 | 0.999333 |
Target: 5'- cCCCGAGGAagaccuggugguCGUCuccGGGAggacuuucaccgucCGGUGGAAc -3' miRNA: 3'- -GGGUUCCU------------GCAGu--UCCU--------------GCUACCUUu -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 130230 | 0.66 | 0.999072 |
Target: 5'- aCCCAAaGACcUCAucGGuACGAUGGAAu -3' miRNA: 3'- -GGGUUcCUGcAGUu-CC-UGCUACCUUu -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 235110 | 0.66 | 0.999017 |
Target: 5'- uUCCGGGGcCGUCcGGGAUGAucccagugauccuuUGGAc- -3' miRNA: 3'- -GGGUUCCuGCAGuUCCUGCU--------------ACCUuu -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 252546 | 0.67 | 0.998655 |
Target: 5'- -gCAGGGAUGUCGu---CGGUGGAGAg -3' miRNA: 3'- ggGUUCCUGCAGUuccuGCUACCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 84446 | 0.67 | 0.998655 |
Target: 5'- aCCGAGGugcGCGUCGAGGACaaa-GAGAu -3' miRNA: 3'- gGGUUCC---UGCAGUUCCUGcuacCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 259579 | 0.67 | 0.998655 |
Target: 5'- gCgCAggcGGGACugcgAAGGACGAUGGAGAa -3' miRNA: 3'- -GgGU---UCCUGcag-UUCCUGCUACCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 308214 | 0.67 | 0.998655 |
Target: 5'- aCCGAGGGCGccaacaCAGGGGCacUGGAu- -3' miRNA: 3'- gGGUUCCUGCa-----GUUCCUGcuACCUuu -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 11614 | 0.67 | 0.998394 |
Target: 5'- cCCCGcacAGGACGcCAGGGauGCGGUGcAGAa -3' miRNA: 3'- -GGGU---UCCUGCaGUUCC--UGCUACcUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 30506 | 0.67 | 0.99809 |
Target: 5'- cCCCGuugacaaaAGGACGccacUCGAGG-CGAUuGGAGAc -3' miRNA: 3'- -GGGU--------UCCUGC----AGUUCCuGCUA-CCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 196523 | 0.67 | 0.99774 |
Target: 5'- aCCAu-GAUGaaGAGGAUGAUGGAGAu -3' miRNA: 3'- gGGUucCUGCagUUCCUGCUACCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 222114 | 0.67 | 0.99774 |
Target: 5'- aCCAu-GAUGaaGAGGAUGAUGGAGAu -3' miRNA: 3'- gGGUucCUGCagUUCCUGCUACCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 76747 | 0.68 | 0.996878 |
Target: 5'- cCCCAAGGGUGUCccGAGGGCcccGAcGGAGGa -3' miRNA: 3'- -GGGUUCCUGCAG--UUCCUG---CUaCCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 172305 | 0.68 | 0.996354 |
Target: 5'- gCgGGGGugGgacagGAGGugGGUGGAAAc -3' miRNA: 3'- gGgUUCCugCag---UUCCugCUACCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 58955 | 0.68 | 0.99576 |
Target: 5'- aCCCAugu-CGUCcAGGACGAUGGcGAc -3' miRNA: 3'- -GGGUuccuGCAGuUCCUGCUACCuUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 3948 | 0.68 | 0.99576 |
Target: 5'- aCCGGGGGCGgCGAGGGaag-GGAAAg -3' miRNA: 3'- gGGUUCCUGCaGUUCCUgcuaCCUUU- -5' |
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10534 | 3' | -51.4 | NC_002687.1 | + | 132208 | 0.69 | 0.993488 |
Target: 5'- gUCAAGacUGUCGAGG-CGAUGGAAAa -3' miRNA: 3'- gGGUUCcuGCAGUUCCuGCUACCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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