miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10534 5' -54.5 NC_002687.1 + 179802 0.66 0.993719
Target:  5'- gUGCCGAGAuuucaggaauugcuACGGCucgggcgagagagucACCA-GGACUUCc -3'
miRNA:   3'- -ACGGCUCU--------------UGCUG---------------UGGUuCCUGGAGu -5'
10534 5' -54.5 NC_002687.1 + 259053 0.66 0.993633
Target:  5'- cGCCGcGcGACGAguUCAAGGACgUCu -3'
miRNA:   3'- aCGGCuC-UUGCUguGGUUCCUGgAGu -5'
10534 5' -54.5 NC_002687.1 + 31455 0.66 0.993633
Target:  5'- aGCCGGGAAC-ACgACCAAGGGaggCGa -3'
miRNA:   3'- aCGGCUCUUGcUG-UGGUUCCUggaGU- -5'
10534 5' -54.5 NC_002687.1 + 226567 0.66 0.992724
Target:  5'- cGCUGGGAcCGAUgggACCGauGGGACCa-- -3'
miRNA:   3'- aCGGCUCUuGCUG---UGGU--UCCUGGagu -5'
10534 5' -54.5 NC_002687.1 + 330725 0.66 0.992724
Target:  5'- cUGCCGcGcACGACGCCuauguugggaGAGGAUCgagCAa -3'
miRNA:   3'- -ACGGCuCuUGCUGUGG----------UUCCUGGa--GU- -5'
10534 5' -54.5 NC_002687.1 + 7591 0.66 0.992724
Target:  5'- gUGCC-AGuggUGACACCAGcGACCUCu -3'
miRNA:   3'- -ACGGcUCuu-GCUGUGGUUcCUGGAGu -5'
10534 5' -54.5 NC_002687.1 + 182737 0.66 0.992724
Target:  5'- gUGUCGcGAcauCGAuCGCCGAGGGCCg-- -3'
miRNA:   3'- -ACGGCuCUu--GCU-GUGGUUCCUGGagu -5'
10534 5' -54.5 NC_002687.1 + 297706 0.66 0.992724
Target:  5'- cGCCGGGGAUGGgGCCgGAGcGCC-CAg -3'
miRNA:   3'- aCGGCUCUUGCUgUGG-UUCcUGGaGU- -5'
10534 5' -54.5 NC_002687.1 + 41086 0.66 0.990599
Target:  5'- cGaCCGAGAAUGAgG-CAGGuGGCCUCc -3'
miRNA:   3'- aC-GGCUCUUGCUgUgGUUC-CUGGAGu -5'
10534 5' -54.5 NC_002687.1 + 300668 0.66 0.989367
Target:  5'- cGCCGAGAAgcuCACCu-GGACCg-- -3'
miRNA:   3'- aCGGCUCUUgcuGUGGuuCCUGGagu -5'
10534 5' -54.5 NC_002687.1 + 131005 0.66 0.989367
Target:  5'- gUGCUGcaAGAagaagguucugACGACACagaugaagucgaCGAGGGCCUCGa -3'
miRNA:   3'- -ACGGC--UCU-----------UGCUGUG------------GUUCCUGGAGU- -5'
10534 5' -54.5 NC_002687.1 + 85559 0.66 0.988013
Target:  5'- aGCCGAGG--GAC-CCaAAGGACC-CAa -3'
miRNA:   3'- aCGGCUCUugCUGuGG-UUCCUGGaGU- -5'
10534 5' -54.5 NC_002687.1 + 264064 0.66 0.988013
Target:  5'- gUGUCGAGAGCGgugccauucacGCACCA-GGAaCUCc -3'
miRNA:   3'- -ACGGCUCUUGC-----------UGUGGUuCCUgGAGu -5'
10534 5' -54.5 NC_002687.1 + 121284 0.67 0.986374
Target:  5'- cGCCGAcaaGGCGaggaagacgcauuGCGCCAAGGAgUUCAu -3'
miRNA:   3'- aCGGCUc--UUGC-------------UGUGGUUCCUgGAGU- -5'
10534 5' -54.5 NC_002687.1 + 307605 0.67 0.984909
Target:  5'- gUGCUGGuGGugGAgGCC--GGACCUCu -3'
miRNA:   3'- -ACGGCU-CUugCUgUGGuuCCUGGAGu -5'
10534 5' -54.5 NC_002687.1 + 280927 0.67 0.983867
Target:  5'- aUGCCGGGGgcccguguugaagcaGCGuCGgCGGGGGCCUgGg -3'
miRNA:   3'- -ACGGCUCU---------------UGCuGUgGUUCCUGGAgU- -5'
10534 5' -54.5 NC_002687.1 + 4577 0.67 0.983143
Target:  5'- cUGCCGAGcucUGACGCCcggaaggguGGGugCUCu -3'
miRNA:   3'- -ACGGCUCuu-GCUGUGGu--------UCCugGAGu -5'
10534 5' -54.5 NC_002687.1 + 88581 0.67 0.982584
Target:  5'- gGCCGAGGcggagaguagaagcACGACACCuguGACCa-- -3'
miRNA:   3'- aCGGCUCU--------------UGCUGUGGuucCUGGagu -5'
10534 5' -54.5 NC_002687.1 + 95622 0.67 0.981226
Target:  5'- cGUCGAcGAaaucuAUGACGCgAGGGACCUg- -3'
miRNA:   3'- aCGGCU-CU-----UGCUGUGgUUCCUGGAgu -5'
10534 5' -54.5 NC_002687.1 + 283339 0.68 0.974496
Target:  5'- aGCCacGGcGGGCGGCAaaGAGGACCUUg -3'
miRNA:   3'- aCGG--CU-CUUGCUGUggUUCCUGGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.