miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 11408 0.66 0.990671
Target:  5'- aGCGGUAGCg--GUGGc-AGCAGCGgCa -3'
miRNA:   3'- -UGCCGUUGaugUACCucUCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 152297 0.66 0.990671
Target:  5'- uAUGGCuca---GUGGAuAGCAGCGUCa -3'
miRNA:   3'- -UGCCGuugaugUACCUcUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 160891 0.66 0.990671
Target:  5'- cACGGUGACaaccugucACAUGG-GuGCAgacGCGCCa -3'
miRNA:   3'- -UGCCGUUGa-------UGUACCuCuCGU---CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 85417 0.66 0.990194
Target:  5'- gGCGGCGAUugggguuuucgcggUAgAUGGAggcgacgGAGCAGCGg- -3'
miRNA:   3'- -UGCCGUUG--------------AUgUACCU-------CUCGUCGCgg -5'
10536 3' -54.8 NC_002687.1 + 78125 0.66 0.989312
Target:  5'- uCGGCAACaGCgGUGGuGuuucggccguggcGGCGGCGUCu -3'
miRNA:   3'- uGCCGUUGaUG-UACCuC-------------UCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 37090 0.66 0.988645
Target:  5'- aAUGGUggUUGcCAUGGugaaggugaauuguGAGCAGCGUg -3'
miRNA:   3'- -UGCCGuuGAU-GUACCu-------------CUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 253400 0.66 0.988089
Target:  5'- cACGGCcg--GCAgGGAGAaCGGCGCg -3'
miRNA:   3'- -UGCCGuugaUGUaCCUCUcGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 285085 0.66 0.988089
Target:  5'- -gGGgAACgUACAUGGGGAuUAGCGaCCc -3'
miRNA:   3'- ugCCgUUG-AUGUACCUCUcGUCGC-GG- -5'
10536 3' -54.8 NC_002687.1 + 104398 0.66 0.987946
Target:  5'- aGCGGCAuuucgacACgGCGUGGAGAaaggGUuuGCGCUu -3'
miRNA:   3'- -UGCCGU-------UGaUGUACCUCU----CGu-CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 207467 0.66 0.987215
Target:  5'- gGCGGCAcaucgacaaaaACUACGacgagaucGGGGAGCuccuggaucgaaucaGGUGCCu -3'
miRNA:   3'- -UGCCGU-----------UGAUGUa-------CCUCUCG---------------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 21330 0.66 0.986605
Target:  5'- uCGGCGcCUuc--GGAGAGCAGUGUUu -3'
miRNA:   3'- uGCCGUuGAuguaCCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 98754 0.66 0.986605
Target:  5'- uGCGGaCAACgacuuCAUGGgacAGAGCGGUGaCa -3'
miRNA:   3'- -UGCC-GUUGau---GUACC---UCUCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 248169 0.66 0.986605
Target:  5'- gACGGCGAaccaUACAcgugGGAGGGCgAGUucgGCUg -3'
miRNA:   3'- -UGCCGUUg---AUGUa---CCUCUCG-UCG---CGG- -5'
10536 3' -54.8 NC_002687.1 + 234218 0.66 0.986605
Target:  5'- uCGGCcGCUuuaaGCAUGGccuuuGCGGCGUCu -3'
miRNA:   3'- uGCCGuUGA----UGUACCucu--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 86077 0.66 0.986605
Target:  5'- aGCGGggcCAGCgggGCcaGUGGGGccAGCGGgGCCa -3'
miRNA:   3'- -UGCC---GUUGa--UG--UACCUC--UCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 225061 0.66 0.983217
Target:  5'- cCGGCAgcugggGCUGCAgccGGAGAggaacgugGUGGCGCa -3'
miRNA:   3'- uGCCGU------UGAUGUa--CCUCU--------CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 226669 0.66 0.983217
Target:  5'- uCGGCGAggaaggaUGCGUGGAG-GCA-UGCCg -3'
miRNA:   3'- uGCCGUUg------AUGUACCUCuCGUcGCGG- -5'
10536 3' -54.8 NC_002687.1 + 11513 0.66 0.983217
Target:  5'- aGCGGCGGCUAUAgcagcUGcGAcacGAGCGGUaCCa -3'
miRNA:   3'- -UGCCGUUGAUGU-----AC-CU---CUCGUCGcGG- -5'
10536 3' -54.8 NC_002687.1 + 282056 0.66 0.983217
Target:  5'- aGCGGCGGCagggGCcguaGUGGcAGcAGCGGCGgCu -3'
miRNA:   3'- -UGCCGUUGa---UG----UACC-UC-UCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 4376 0.66 0.983032
Target:  5'- cACGGguGCc-CGUGGGGAauguuaaaaauugGUAGCGUCg -3'
miRNA:   3'- -UGCCguUGauGUACCUCU-------------CGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.