Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10536 | 3' | -54.8 | NC_002687.1 | + | 280956 | 0.67 | 0.979219 |
Target: 5'- gGCGGgGGcCUGgGUGGcGGcAGCGGCgGCCg -3' miRNA: 3'- -UGCCgUU-GAUgUACC-UC-UCGUCG-CGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 261324 | 0.67 | 0.974554 |
Target: 5'- gGCGGCAACgGCAUGGcgaAGGGCucgaucaacaGGCucGCUg -3' miRNA: 3'- -UGCCGUUGaUGUACC---UCUCG----------UCG--CGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 182412 | 0.67 | 0.971955 |
Target: 5'- -gGGCAACgcucggGCAaccuUGGAGAgGCAcGCuGCCg -3' miRNA: 3'- ugCCGUUGa-----UGU----ACCUCU-CGU-CG-CGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 55500 | 0.67 | 0.974554 |
Target: 5'- -gGGguGCgugGCAUGGuuacGAGCAcGCGCa -3' miRNA: 3'- ugCCguUGa--UGUACCu---CUCGU-CGCGg -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 38085 | 0.67 | 0.976973 |
Target: 5'- -gGaGCAGCUcaaccACAUGuGGGAGCgGGCGCa -3' miRNA: 3'- ugC-CGUUGA-----UGUAC-CUCUCG-UCGCGg -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 122649 | 0.67 | 0.979002 |
Target: 5'- aACGGCAugcuuccGCU-CGUGGAaaucGCGGcCGCCg -3' miRNA: 3'- -UGCCGU-------UGAuGUACCUcu--CGUC-GCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 275491 | 0.67 | 0.971685 |
Target: 5'- uGCGGCGGCUuCGacGGAGgaaugguAGCucuGCGCCu -3' miRNA: 3'- -UGCCGUUGAuGUa-CCUC-------UCGu--CGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 224735 | 0.67 | 0.971955 |
Target: 5'- uCGGCAucgGCAUcGGGAGUAGCaucGCCa -3' miRNA: 3'- uGCCGUugaUGUAcCUCUCGUCG---CGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 27773 | 0.67 | 0.971955 |
Target: 5'- -gGGUAGCUaGCA-GGGGuguuGCGGCGCg -3' miRNA: 3'- ugCCGUUGA-UGUaCCUCu---CGUCGCGg -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 226770 | 0.67 | 0.974554 |
Target: 5'- gUGGUAGCggugAUGGAG-GUGGUGCCg -3' miRNA: 3'- uGCCGUUGaug-UACCUCuCGUCGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 260555 | 0.68 | 0.968297 |
Target: 5'- gGCGGCAGCggcuCAUGGgaugaGGAGUgggucgaucacguuGGCgGCCa -3' miRNA: 3'- -UGCCGUUGau--GUACC-----UCUCG--------------UCG-CGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 281798 | 0.68 | 0.959643 |
Target: 5'- aACGGCGGggGCA-GGGGccGgGGCGCCa -3' miRNA: 3'- -UGCCGUUgaUGUaCCUCu-CgUCGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 275230 | 0.68 | 0.967407 |
Target: 5'- aGCGGCAcaacacggaagguguGCaguCAUGGAGGuGCucauguacgcaGGCGCCg -3' miRNA: 3'- -UGCCGU---------------UGau-GUACCUCU-CG-----------UCGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 204666 | 0.68 | 0.966193 |
Target: 5'- cAUGGCGACUAUcgaauUGGAG-GCGGaaauguCGCCc -3' miRNA: 3'- -UGCCGUUGAUGu----ACCUCuCGUC------GCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 295304 | 0.68 | 0.951878 |
Target: 5'- uCGGUAguACUACAacuccccUGGcccuGCAGCGCCa -3' miRNA: 3'- uGCCGU--UGAUGU-------ACCucu-CGUCGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 205962 | 0.68 | 0.952269 |
Target: 5'- aGCGGgAugUACG-GGAGAGCcgugaacacGGUGUCg -3' miRNA: 3'- -UGCCgUugAUGUaCCUCUCG---------UCGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 308423 | 0.68 | 0.952269 |
Target: 5'- cCGGCGACcccgGCggGGcGGGC-GCGCCc -3' miRNA: 3'- uGCCGUUGa---UGuaCCuCUCGuCGCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 213436 | 0.68 | 0.96917 |
Target: 5'- cACGGCGGCaUugGUaaGaGAGAGCAGaGCUg -3' miRNA: 3'- -UGCCGUUG-AugUA--C-CUCUCGUCgCGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 278955 | 0.68 | 0.96917 |
Target: 5'- gUGGCAGC-GCAggGGGGGGCAGaC-CCa -3' miRNA: 3'- uGCCGUUGaUGUa-CCUCUCGUC-GcGG- -5' |
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10536 | 3' | -54.8 | NC_002687.1 | + | 291702 | 0.68 | 0.952269 |
Target: 5'- aGCGGCAGCaGCAgc---AGCAGCGCa -3' miRNA: 3'- -UGCCGUUGaUGUaccucUCGUCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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