miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 264080 0.68 0.966193
Target:  5'- gAUGG-AACgucuccACGUGucGAGAGCGGUGCCa -3'
miRNA:   3'- -UGCCgUUGa-----UGUAC--CUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 319240 0.68 0.951485
Target:  5'- aACGGCAGCUuCAgGGcaaagaaAGGGCAcgccuccGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUaCC-------UCUCGU-------CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 287810 0.68 0.952269
Target:  5'- aGCGacGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC--CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 291702 0.68 0.952269
Target:  5'- aGCGGCAGCaGCAgc---AGCAGCGCa -3'
miRNA:   3'- -UGCCGUUGaUGUaccucUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 208979 0.68 0.970306
Target:  5'- aGCGGUAACguuucagACcUGGgagacauugguguucAGAGCAGCGUa -3'
miRNA:   3'- -UGCCGUUGa------UGuACC---------------UCUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 213436 0.68 0.96917
Target:  5'- cACGGCGGCaUugGUaaGaGAGAGCAGaGCUg -3'
miRNA:   3'- -UGCCGUUG-AugUA--C-CUCUCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 260555 0.68 0.968297
Target:  5'- gGCGGCAGCggcuCAUGGgaugaGGAGUgggucgaucacguuGGCgGCCa -3'
miRNA:   3'- -UGCCGUUGau--GUACC-----UCUCG--------------UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 275230 0.68 0.967407
Target:  5'- aGCGGCAcaacacggaagguguGCaguCAUGGAGGuGCucauguacgcaGGCGCCg -3'
miRNA:   3'- -UGCCGU---------------UGau-GUACCUCU-CG-----------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 278955 0.68 0.96917
Target:  5'- gUGGCAGC-GCAggGGGGGGCAGaC-CCa -3'
miRNA:   3'- uGCCGUUGaUGUa-CCUCUCGUC-GcGG- -5'
10536 3' -54.8 NC_002687.1 + 305908 0.69 0.94404
Target:  5'- uCGuGCGugUAgAaaGGAGAGgAGCGCCg -3'
miRNA:   3'- uGC-CGUugAUgUa-CCUCUCgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 237091 0.69 0.939599
Target:  5'- cGCGGCuuCcGCGgaugaUGGAcGAauGCAGCGCCu -3'
miRNA:   3'- -UGCCGuuGaUGU-----ACCU-CU--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 64070 0.69 0.939599
Target:  5'- gACcGCGAa-ACGUGGAGAGCcGUGCUg -3'
miRNA:   3'- -UGcCGUUgaUGUACCUCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 211370 0.69 0.934936
Target:  5'- gACGGC-ACUAUGUcccuacGGAGAGCgcGGCuGCCc -3'
miRNA:   3'- -UGCCGuUGAUGUA------CCUCUCG--UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 154478 0.69 0.934936
Target:  5'- uUGGCAACUGCGacaucggcagGGAGGGCAucCGUCg -3'
miRNA:   3'- uGCCGUUGAUGUa---------CCUCUCGUc-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 128447 0.69 0.948263
Target:  5'- aACGGU----GCGUGGAG-GCGGCGgCa -3'
miRNA:   3'- -UGCCGuugaUGUACCUCuCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 179979 0.69 0.948263
Target:  5'- gGCGcGCGGCUACgaGUGGGaccacuucugcGuGCAGCGCg -3'
miRNA:   3'- -UGC-CGUUGAUG--UACCU-----------CuCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 225574 0.69 0.948263
Target:  5'- -gGGCAGCUGgGgccggagcGGGGGGUGGUGCUg -3'
miRNA:   3'- ugCCGUUGAUgUa-------CCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 208566 0.69 0.939599
Target:  5'- aGCaGCAGCgACgAUGGAGcAGCAGCGaCg -3'
miRNA:   3'- -UGcCGUUGaUG-UACCUC-UCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 297303 0.7 0.927015
Target:  5'- cGCGuGCGGCgcGCGcGGGGAGCAGCcaaaugaucucgaugGCCg -3'
miRNA:   3'- -UGC-CGUUGa-UGUaCCUCUCGUCG---------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 307788 0.7 0.902299
Target:  5'- gACGGCAGCgaugGUGauGAGGGCAGCGaCg -3'
miRNA:   3'- -UGCCGUUGaug-UAC--CUCUCGUCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.