miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 214609 1.12 0.004827
Target:  5'- aACGGCAACUACAUGGAGAGCAGCGCCa -3'
miRNA:   3'- -UGCCGUUGAUGUACCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 138336 0.78 0.53864
Target:  5'- cGCGGCuGCUGCuGUGGAGAGgCcGCGUCg -3'
miRNA:   3'- -UGCCGuUGAUG-UACCUCUC-GuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 10377 0.76 0.656184
Target:  5'- uGCGGCGACggGgGUGGAGAagGCAGCGg- -3'
miRNA:   3'- -UGCCGUUGa-UgUACCUCU--CGUCGCgg -5'
10536 3' -54.8 NC_002687.1 + 11318 0.75 0.714716
Target:  5'- -aGGCGAUaUACAUGGGGGGCGGgacaguUGCCg -3'
miRNA:   3'- ugCCGUUG-AUGUACCUCUCGUC------GCGG- -5'
10536 3' -54.8 NC_002687.1 + 283183 0.74 0.733788
Target:  5'- aGCGGCAGCaACA-GGGGcGGCAGCaCCa -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCGUCGcGG- -5'
10536 3' -54.8 NC_002687.1 + 282158 0.74 0.752532
Target:  5'- uGCGGCGGCaGCGgcGGGAGUAGgGCCu -3'
miRNA:   3'- -UGCCGUUGaUGUacCUCUCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 281945 0.74 0.761759
Target:  5'- cGCGGCAGgaGCA---GGGGCGGUGCCg -3'
miRNA:   3'- -UGCCGUUgaUGUaccUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 332257 0.73 0.77088
Target:  5'- gGCGGCGGCgcuuggGCGUGGAGGcgauuGCGGCaucaugaccaccGCCg -3'
miRNA:   3'- -UGCCGUUGa-----UGUACCUCU-----CGUCG------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 288761 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 287682 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 287168 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 333128 0.72 0.839035
Target:  5'- -aGGCgAGCUACA-GGaAGAGUGGCGCg -3'
miRNA:   3'- ugCCG-UUGAUGUaCC-UCUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 2655 0.72 0.854464
Target:  5'- uUGGCGGCa--AUGGGGAGguGCGUg -3'
miRNA:   3'- uGCCGUUGaugUACCUCUCguCGCGg -5'
10536 3' -54.8 NC_002687.1 + 61439 0.72 0.854464
Target:  5'- uCGGCAGCacggACGUGGAGAcCGGaCGCg -3'
miRNA:   3'- uGCCGUUGa---UGUACCUCUcGUC-GCGg -5'
10536 3' -54.8 NC_002687.1 + 224168 0.71 0.869144
Target:  5'- gGCGGUGGCg--GUGGcgGGGGCAGUGCUg -3'
miRNA:   3'- -UGCCGUUGaugUACC--UCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 281187 0.71 0.869144
Target:  5'- gGCGGCGGaagUACAUGG--GGUGGUGCCa -3'
miRNA:   3'- -UGCCGUUg--AUGUACCucUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 11333 0.71 0.869144
Target:  5'- aGCGGCGGCaGCA-GGAGcAGCgGGUGUCg -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCG-UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 39921 0.71 0.883031
Target:  5'- gGauGCAGCaGCGUGuAGAGCAGuCGCCu -3'
miRNA:   3'- -UgcCGUUGaUGUACcUCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 259797 0.71 0.889666
Target:  5'- uCGaGCGAUguuCAUGGccaaggcGGGCAGCGCCg -3'
miRNA:   3'- uGC-CGUUGau-GUACCu------CUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 307788 0.7 0.902299
Target:  5'- gACGGCAGCgaugGUGauGAGGGCAGCGaCg -3'
miRNA:   3'- -UGCCGUUGaug-UAC--CUCUCGUCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.