miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 280956 0.67 0.979219
Target:  5'- gGCGGgGGcCUGgGUGGcGGcAGCGGCgGCCg -3'
miRNA:   3'- -UGCCgUU-GAUgUACC-UC-UCGUCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 122649 0.67 0.979002
Target:  5'- aACGGCAugcuuccGCU-CGUGGAaaucGCGGcCGCCg -3'
miRNA:   3'- -UGCCGU-------UGAuGUACCUcu--CGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 38085 0.67 0.976973
Target:  5'- -gGaGCAGCUcaaccACAUGuGGGAGCgGGCGCa -3'
miRNA:   3'- ugC-CGUUGA-----UGUAC-CUCUCG-UCGCGg -5'
10536 3' -54.8 NC_002687.1 + 226770 0.67 0.974554
Target:  5'- gUGGUAGCggugAUGGAG-GUGGUGCCg -3'
miRNA:   3'- uGCCGUUGaug-UACCUCuCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 55500 0.67 0.974554
Target:  5'- -gGGguGCgugGCAUGGuuacGAGCAcGCGCa -3'
miRNA:   3'- ugCCguUGa--UGUACCu---CUCGU-CGCGg -5'
10536 3' -54.8 NC_002687.1 + 261324 0.67 0.974554
Target:  5'- gGCGGCAACgGCAUGGcgaAGGGCucgaucaacaGGCucGCUg -3'
miRNA:   3'- -UGCCGUUGaUGUACC---UCUCG----------UCG--CGG- -5'
10536 3' -54.8 NC_002687.1 + 27773 0.67 0.971955
Target:  5'- -gGGUAGCUaGCA-GGGGuguuGCGGCGCg -3'
miRNA:   3'- ugCCGUUGA-UGUaCCUCu---CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 182412 0.67 0.971955
Target:  5'- -gGGCAACgcucggGCAaccuUGGAGAgGCAcGCuGCCg -3'
miRNA:   3'- ugCCGUUGa-----UGU----ACCUCU-CGU-CG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 224735 0.67 0.971955
Target:  5'- uCGGCAucgGCAUcGGGAGUAGCaucGCCa -3'
miRNA:   3'- uGCCGUugaUGUAcCUCUCGUCG---CGG- -5'
10536 3' -54.8 NC_002687.1 + 275491 0.67 0.971685
Target:  5'- uGCGGCGGCUuCGacGGAGgaaugguAGCucuGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUa-CCUC-------UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 208979 0.68 0.970306
Target:  5'- aGCGGUAACguuucagACcUGGgagacauugguguucAGAGCAGCGUa -3'
miRNA:   3'- -UGCCGUUGa------UGuACC---------------UCUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 213436 0.68 0.96917
Target:  5'- cACGGCGGCaUugGUaaGaGAGAGCAGaGCUg -3'
miRNA:   3'- -UGCCGUUG-AugUA--C-CUCUCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 278955 0.68 0.96917
Target:  5'- gUGGCAGC-GCAggGGGGGGCAGaC-CCa -3'
miRNA:   3'- uGCCGUUGaUGUa-CCUCUCGUC-GcGG- -5'
10536 3' -54.8 NC_002687.1 + 260555 0.68 0.968297
Target:  5'- gGCGGCAGCggcuCAUGGgaugaGGAGUgggucgaucacguuGGCgGCCa -3'
miRNA:   3'- -UGCCGUUGau--GUACC-----UCUCG--------------UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 275230 0.68 0.967407
Target:  5'- aGCGGCAcaacacggaagguguGCaguCAUGGAGGuGCucauguacgcaGGCGCCg -3'
miRNA:   3'- -UGCCGU---------------UGau-GUACCUCU-CG-----------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 264080 0.68 0.966193
Target:  5'- gAUGG-AACgucuccACGUGucGAGAGCGGUGCCa -3'
miRNA:   3'- -UGCCgUUGa-----UGUAC--CUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 249091 0.68 0.966193
Target:  5'- aACGGCAACgagcuCAU-GAGAGC-GCGUg -3'
miRNA:   3'- -UGCCGUUGau---GUAcCUCUCGuCGCGg -5'
10536 3' -54.8 NC_002687.1 + 204666 0.68 0.966193
Target:  5'- cAUGGCGACUAUcgaauUGGAG-GCGGaaauguCGCCc -3'
miRNA:   3'- -UGCCGUUGAUGu----ACCUCuCGUC------GCGG- -5'
10536 3' -54.8 NC_002687.1 + 108732 0.68 0.963019
Target:  5'- gAUGGCAcuGCuUGCAUGGGaccaAGCAGagaGCCa -3'
miRNA:   3'- -UGCCGU--UG-AUGUACCUc---UCGUCg--CGG- -5'
10536 3' -54.8 NC_002687.1 + 71360 0.68 0.961693
Target:  5'- cACGGcCGAUgucgaucgaucugACAUGGcccgcaguGAGCGGUGCCa -3'
miRNA:   3'- -UGCC-GUUGa------------UGUACCu-------CUCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.