miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 281798 0.68 0.959643
Target:  5'- aACGGCGGggGCA-GGGGccGgGGCGCCa -3'
miRNA:   3'- -UGCCGUUgaUGUaCCUCu-CgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 163091 0.68 0.959643
Target:  5'- -aGGCGGCUACAUGaacuccaGGCcguGCGCCa -3'
miRNA:   3'- ugCCGUUGAUGUACcuc----UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 216642 0.68 0.959643
Target:  5'- -gGGCGACUAC-UGG-GGGUGGacaCGCCg -3'
miRNA:   3'- ugCCGUUGAUGuACCuCUCGUC---GCGG- -5'
10536 3' -54.8 NC_002687.1 + 291702 0.68 0.952269
Target:  5'- aGCGGCAGCaGCAgc---AGCAGCGCa -3'
miRNA:   3'- -UGCCGUUGaUGUaccucUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 287810 0.68 0.952269
Target:  5'- aGCGacGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC--CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 205962 0.68 0.952269
Target:  5'- aGCGGgAugUACG-GGAGAGCcgugaacacGGUGUCg -3'
miRNA:   3'- -UGCCgUugAUGUaCCUCUCG---------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 308423 0.68 0.952269
Target:  5'- cCGGCGACcccgGCggGGcGGGC-GCGCCc -3'
miRNA:   3'- uGCCGUUGa---UGuaCCuCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 295304 0.68 0.951878
Target:  5'- uCGGUAguACUACAacuccccUGGcccuGCAGCGCCa -3'
miRNA:   3'- uGCCGU--UGAUGU-------ACCucu-CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 319240 0.68 0.951485
Target:  5'- aACGGCAGCUuCAgGGcaaagaaAGGGCAcgccuccGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUaCC-------UCUCGU-------CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 128447 0.69 0.948263
Target:  5'- aACGGU----GCGUGGAG-GCGGCGgCa -3'
miRNA:   3'- -UGCCGuugaUGUACCUCuCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 179979 0.69 0.948263
Target:  5'- gGCGcGCGGCUACgaGUGGGaccacuucugcGuGCAGCGCg -3'
miRNA:   3'- -UGC-CGUUGAUG--UACCU-----------CuCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 225574 0.69 0.948263
Target:  5'- -gGGCAGCUGgGgccggagcGGGGGGUGGUGCUg -3'
miRNA:   3'- ugCCGUUGAUgUa-------CCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 305908 0.69 0.94404
Target:  5'- uCGuGCGugUAgAaaGGAGAGgAGCGCCg -3'
miRNA:   3'- uGC-CGUugAUgUa-CCUCUCgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 208566 0.69 0.939599
Target:  5'- aGCaGCAGCgACgAUGGAGcAGCAGCGaCg -3'
miRNA:   3'- -UGcCGUUGaUG-UACCUC-UCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 237091 0.69 0.939599
Target:  5'- cGCGGCuuCcGCGgaugaUGGAcGAauGCAGCGCCu -3'
miRNA:   3'- -UGCCGuuGaUGU-----ACCU-CU--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 64070 0.69 0.939599
Target:  5'- gACcGCGAa-ACGUGGAGAGCcGUGCUg -3'
miRNA:   3'- -UGcCGUUgaUGUACCUCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 154478 0.69 0.934936
Target:  5'- uUGGCAACUGCGacaucggcagGGAGGGCAucCGUCg -3'
miRNA:   3'- uGCCGUUGAUGUa---------CCUCUCGUc-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 211370 0.69 0.934936
Target:  5'- gACGGC-ACUAUGUcccuacGGAGAGCgcGGCuGCCc -3'
miRNA:   3'- -UGCCGuUGAUGUA------CCUCUCG--UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 297303 0.7 0.927015
Target:  5'- cGCGuGCGGCgcGCGcGGGGAGCAGCcaaaugaucucgaugGCCg -3'
miRNA:   3'- -UGC-CGUUGa-UGUaCCUCUCGUCG---------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 215203 0.7 0.924945
Target:  5'- -gGGacCAACUACGUGGAgGAGUuuGCGUCg -3'
miRNA:   3'- ugCC--GUUGAUGUACCU-CUCGu-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.