miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 2655 0.72 0.854464
Target:  5'- uUGGCGGCa--AUGGGGAGguGCGUg -3'
miRNA:   3'- uGCCGUUGaugUACCUCUCguCGCGg -5'
10536 3' -54.8 NC_002687.1 + 4376 0.66 0.983032
Target:  5'- cACGGguGCc-CGUGGGGAauguuaaaaauugGUAGCGUCg -3'
miRNA:   3'- -UGCCguUGauGUACCUCU-------------CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 10377 0.76 0.656184
Target:  5'- uGCGGCGACggGgGUGGAGAagGCAGCGg- -3'
miRNA:   3'- -UGCCGUUGa-UgUACCUCU--CGUCGCgg -5'
10536 3' -54.8 NC_002687.1 + 11318 0.75 0.714716
Target:  5'- -aGGCGAUaUACAUGGGGGGCGGgacaguUGCCg -3'
miRNA:   3'- ugCCGUUG-AUGUACCUCUCGUC------GCGG- -5'
10536 3' -54.8 NC_002687.1 + 11333 0.71 0.869144
Target:  5'- aGCGGCGGCaGCA-GGAGcAGCgGGUGUCg -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCG-UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 11408 0.66 0.990671
Target:  5'- aGCGGUAGCg--GUGGc-AGCAGCGgCa -3'
miRNA:   3'- -UGCCGUUGaugUACCucUCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 11513 0.66 0.983217
Target:  5'- aGCGGCGGCUAUAgcagcUGcGAcacGAGCGGUaCCa -3'
miRNA:   3'- -UGCCGUUGAUGU-----AC-CU---CUCGUCGcGG- -5'
10536 3' -54.8 NC_002687.1 + 21330 0.66 0.986605
Target:  5'- uCGGCGcCUuc--GGAGAGCAGUGUUu -3'
miRNA:   3'- uGCCGUuGAuguaCCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 27773 0.67 0.971955
Target:  5'- -gGGUAGCUaGCA-GGGGuguuGCGGCGCg -3'
miRNA:   3'- ugCCGUUGA-UGUaCCUCu---CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 37090 0.66 0.988645
Target:  5'- aAUGGUggUUGcCAUGGugaaggugaauuguGAGCAGCGUg -3'
miRNA:   3'- -UGCCGuuGAU-GUACCu-------------CUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 38085 0.67 0.976973
Target:  5'- -gGaGCAGCUcaaccACAUGuGGGAGCgGGCGCa -3'
miRNA:   3'- ugC-CGUUGA-----UGUAC-CUCUCG-UCGCGg -5'
10536 3' -54.8 NC_002687.1 + 39921 0.71 0.883031
Target:  5'- gGauGCAGCaGCGUGuAGAGCAGuCGCCu -3'
miRNA:   3'- -UgcCGUUGaUGUACcUCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 55500 0.67 0.974554
Target:  5'- -gGGguGCgugGCAUGGuuacGAGCAcGCGCa -3'
miRNA:   3'- ugCCguUGa--UGUACCu---CUCGU-CGCGg -5'
10536 3' -54.8 NC_002687.1 + 61439 0.72 0.854464
Target:  5'- uCGGCAGCacggACGUGGAGAcCGGaCGCg -3'
miRNA:   3'- uGCCGUUGa---UGUACCUCUcGUC-GCGg -5'
10536 3' -54.8 NC_002687.1 + 64070 0.69 0.939599
Target:  5'- gACcGCGAa-ACGUGGAGAGCcGUGCUg -3'
miRNA:   3'- -UGcCGUUgaUGUACCUCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 69049 0.7 0.924945
Target:  5'- gGCGGCggUgGCgGUGGuGucGGCGGUGCCg -3'
miRNA:   3'- -UGCCGuuGaUG-UACCuC--UCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 71360 0.68 0.961693
Target:  5'- cACGGcCGAUgucgaucgaucugACAUGGcccgcaguGAGCGGUGCCa -3'
miRNA:   3'- -UGCC-GUUGa------------UGUACCu-------CUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 78125 0.66 0.989312
Target:  5'- uCGGCAACaGCgGUGGuGuuucggccguggcGGCGGCGUCu -3'
miRNA:   3'- uGCCGUUGaUG-UACCuC-------------UCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 85417 0.66 0.990194
Target:  5'- gGCGGCGAUugggguuuucgcggUAgAUGGAggcgacgGAGCAGCGg- -3'
miRNA:   3'- -UGCCGUUG--------------AUgUACCU-------CUCGUCGCgg -5'
10536 3' -54.8 NC_002687.1 + 86077 0.66 0.986605
Target:  5'- aGCGGggcCAGCgggGCcaGUGGGGccAGCGGgGCCa -3'
miRNA:   3'- -UGCC---GUUGa--UG--UACCUC--UCGUCgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.