miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 215203 0.7 0.924945
Target:  5'- -gGGacCAACUACGUGGAgGAGUuuGCGUCg -3'
miRNA:   3'- ugCC--GUUGAUGUACCU-CUCGu-CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 216642 0.68 0.959643
Target:  5'- -gGGCGACUAC-UGG-GGGUGGacaCGCCg -3'
miRNA:   3'- ugCCGUUGAUGuACCuCUCGUC---GCGG- -5'
10536 3' -54.8 NC_002687.1 + 224168 0.71 0.869144
Target:  5'- gGCGGUGGCg--GUGGcgGGGGCAGUGCUg -3'
miRNA:   3'- -UGCCGUUGaugUACC--UCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 224735 0.67 0.971955
Target:  5'- uCGGCAucgGCAUcGGGAGUAGCaucGCCa -3'
miRNA:   3'- uGCCGUugaUGUAcCUCUCGUCG---CGG- -5'
10536 3' -54.8 NC_002687.1 + 225061 0.66 0.983217
Target:  5'- cCGGCAgcugggGCUGCAgccGGAGAggaacgugGUGGCGCa -3'
miRNA:   3'- uGCCGU------UGAUGUa--CCUCU--------CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 225574 0.69 0.948263
Target:  5'- -gGGCAGCUGgGgccggagcGGGGGGUGGUGCUg -3'
miRNA:   3'- ugCCGUUGAUgUa-------CCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 226669 0.66 0.983217
Target:  5'- uCGGCGAggaaggaUGCGUGGAG-GCA-UGCCg -3'
miRNA:   3'- uGCCGUUg------AUGUACCUCuCGUcGCGG- -5'
10536 3' -54.8 NC_002687.1 + 226770 0.67 0.974554
Target:  5'- gUGGUAGCggugAUGGAG-GUGGUGCCg -3'
miRNA:   3'- uGCCGUUGaug-UACCUCuCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 234218 0.66 0.986605
Target:  5'- uCGGCcGCUuuaaGCAUGGccuuuGCGGCGUCu -3'
miRNA:   3'- uGCCGuUGA----UGUACCucu--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 237091 0.69 0.939599
Target:  5'- cGCGGCuuCcGCGgaugaUGGAcGAauGCAGCGCCu -3'
miRNA:   3'- -UGCCGuuGaUGU-----ACCU-CU--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 248169 0.66 0.986605
Target:  5'- gACGGCGAaccaUACAcgugGGAGGGCgAGUucgGCUg -3'
miRNA:   3'- -UGCCGUUg---AUGUa---CCUCUCG-UCG---CGG- -5'
10536 3' -54.8 NC_002687.1 + 249091 0.68 0.966193
Target:  5'- aACGGCAACgagcuCAU-GAGAGC-GCGUg -3'
miRNA:   3'- -UGCCGUUGau---GUAcCUCUCGuCGCGg -5'
10536 3' -54.8 NC_002687.1 + 253400 0.66 0.988089
Target:  5'- cACGGCcg--GCAgGGAGAaCGGCGCg -3'
miRNA:   3'- -UGCCGuugaUGUaCCUCUcGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 259797 0.71 0.889666
Target:  5'- uCGaGCGAUguuCAUGGccaaggcGGGCAGCGCCg -3'
miRNA:   3'- uGC-CGUUGau-GUACCu------CUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 260555 0.68 0.968297
Target:  5'- gGCGGCAGCggcuCAUGGgaugaGGAGUgggucgaucacguuGGCgGCCa -3'
miRNA:   3'- -UGCCGUUGau--GUACC-----UCUCG--------------UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 261324 0.67 0.974554
Target:  5'- gGCGGCAACgGCAUGGcgaAGGGCucgaucaacaGGCucGCUg -3'
miRNA:   3'- -UGCCGUUGaUGUACC---UCUCG----------UCG--CGG- -5'
10536 3' -54.8 NC_002687.1 + 264080 0.68 0.966193
Target:  5'- gAUGG-AACgucuccACGUGucGAGAGCGGUGCCa -3'
miRNA:   3'- -UGCCgUUGa-----UGUAC--CUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 275230 0.68 0.967407
Target:  5'- aGCGGCAcaacacggaagguguGCaguCAUGGAGGuGCucauguacgcaGGCGCCg -3'
miRNA:   3'- -UGCCGU---------------UGau-GUACCUCU-CG-----------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 275491 0.67 0.971685
Target:  5'- uGCGGCGGCUuCGacGGAGgaaugguAGCucuGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUa-CCUC-------UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 278955 0.68 0.96917
Target:  5'- gUGGCAGC-GCAggGGGGGGCAGaC-CCa -3'
miRNA:   3'- uGCCGUUGaUGUa-CCUCUCGUC-GcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.