miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 280956 0.67 0.979219
Target:  5'- gGCGGgGGcCUGgGUGGcGGcAGCGGCgGCCg -3'
miRNA:   3'- -UGCCgUU-GAUgUACC-UC-UCGUCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 281187 0.71 0.869144
Target:  5'- gGCGGCGGaagUACAUGG--GGUGGUGCCa -3'
miRNA:   3'- -UGCCGUUg--AUGUACCucUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 281798 0.68 0.959643
Target:  5'- aACGGCGGggGCA-GGGGccGgGGCGCCa -3'
miRNA:   3'- -UGCCGUUgaUGUaCCUCu-CgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 281945 0.74 0.761759
Target:  5'- cGCGGCAGgaGCA---GGGGCGGUGCCg -3'
miRNA:   3'- -UGCCGUUgaUGUaccUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 282056 0.66 0.983217
Target:  5'- aGCGGCGGCagggGCcguaGUGGcAGcAGCGGCGgCu -3'
miRNA:   3'- -UGCCGUUGa---UG----UACC-UC-UCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 282158 0.74 0.752532
Target:  5'- uGCGGCGGCaGCGgcGGGAGUAGgGCCu -3'
miRNA:   3'- -UGCCGUUGaUGUacCUCUCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 283183 0.74 0.733788
Target:  5'- aGCGGCAGCaACA-GGGGcGGCAGCaCCa -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCGUCGcGG- -5'
10536 3' -54.8 NC_002687.1 + 285085 0.66 0.988089
Target:  5'- -gGGgAACgUACAUGGGGAuUAGCGaCCc -3'
miRNA:   3'- ugCCgUUG-AUGUACCUCUcGUCGC-GG- -5'
10536 3' -54.8 NC_002687.1 + 287168 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 287682 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 287810 0.68 0.952269
Target:  5'- aGCGacGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC--CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 288761 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 291702 0.68 0.952269
Target:  5'- aGCGGCAGCaGCAgc---AGCAGCGCa -3'
miRNA:   3'- -UGCCGUUGaUGUaccucUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 293200 0.7 0.919615
Target:  5'- -aGGUAGC--CGUGGAGcuGCAGCGCa -3'
miRNA:   3'- ugCCGUUGauGUACCUCu-CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 295106 0.7 0.921774
Target:  5'- cGCGaGCGGCgcgcGCGcGGGGAGCAGCcaaaugaucucggugGCCg -3'
miRNA:   3'- -UGC-CGUUGa---UGUaCCUCUCGUCG---------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 295304 0.68 0.951878
Target:  5'- uCGGUAguACUACAacuccccUGGcccuGCAGCGCCa -3'
miRNA:   3'- uGCCGU--UGAUGU-------ACCucu-CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 297303 0.7 0.927015
Target:  5'- cGCGuGCGGCgcGCGcGGGGAGCAGCcaaaugaucucgaugGCCg -3'
miRNA:   3'- -UGC-CGUUGa-UGUaCCUCUCGUCG---------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 305908 0.69 0.94404
Target:  5'- uCGuGCGugUAgAaaGGAGAGgAGCGCCg -3'
miRNA:   3'- uGC-CGUugAUgUa-CCUCUCgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 307788 0.7 0.902299
Target:  5'- gACGGCAGCgaugGUGauGAGGGCAGCGaCg -3'
miRNA:   3'- -UGCCGUUGaug-UAC--CUCUCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 308423 0.68 0.952269
Target:  5'- cCGGCGACcccgGCggGGcGGGC-GCGCCc -3'
miRNA:   3'- uGCCGUUGa---UGuaCCuCUCGuCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.