miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 224168 0.71 0.869144
Target:  5'- gGCGGUGGCg--GUGGcgGGGGCAGUGCUg -3'
miRNA:   3'- -UGCCGUUGaugUACC--UCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 216642 0.68 0.959643
Target:  5'- -gGGCGACUAC-UGG-GGGUGGacaCGCCg -3'
miRNA:   3'- ugCCGUUGAUGuACCuCUCGUC---GCGG- -5'
10536 3' -54.8 NC_002687.1 + 215203 0.7 0.924945
Target:  5'- -gGGacCAACUACGUGGAgGAGUuuGCGUCg -3'
miRNA:   3'- ugCC--GUUGAUGUACCU-CUCGu-CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 214609 1.12 0.004827
Target:  5'- aACGGCAACUACAUGGAGAGCAGCGCCa -3'
miRNA:   3'- -UGCCGUUGAUGUACCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 213436 0.68 0.96917
Target:  5'- cACGGCGGCaUugGUaaGaGAGAGCAGaGCUg -3'
miRNA:   3'- -UGCCGUUG-AugUA--C-CUCUCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 211370 0.69 0.934936
Target:  5'- gACGGC-ACUAUGUcccuacGGAGAGCgcGGCuGCCc -3'
miRNA:   3'- -UGCCGuUGAUGUA------CCUCUCG--UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 208979 0.68 0.970306
Target:  5'- aGCGGUAACguuucagACcUGGgagacauugguguucAGAGCAGCGUa -3'
miRNA:   3'- -UGCCGUUGa------UGuACC---------------UCUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 208566 0.69 0.939599
Target:  5'- aGCaGCAGCgACgAUGGAGcAGCAGCGaCg -3'
miRNA:   3'- -UGcCGUUGaUG-UACCUC-UCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 207467 0.66 0.987215
Target:  5'- gGCGGCAcaucgacaaaaACUACGacgagaucGGGGAGCuccuggaucgaaucaGGUGCCu -3'
miRNA:   3'- -UGCCGU-----------UGAUGUa-------CCUCUCG---------------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 205962 0.68 0.952269
Target:  5'- aGCGGgAugUACG-GGAGAGCcgugaacacGGUGUCg -3'
miRNA:   3'- -UGCCgUugAUGUaCCUCUCG---------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 204666 0.68 0.966193
Target:  5'- cAUGGCGACUAUcgaauUGGAG-GCGGaaauguCGCCc -3'
miRNA:   3'- -UGCCGUUGAUGu----ACCUCuCGUC------GCGG- -5'
10536 3' -54.8 NC_002687.1 + 182412 0.67 0.971955
Target:  5'- -gGGCAACgcucggGCAaccuUGGAGAgGCAcGCuGCCg -3'
miRNA:   3'- ugCCGUUGa-----UGU----ACCUCU-CGU-CG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 179979 0.69 0.948263
Target:  5'- gGCGcGCGGCUACgaGUGGGaccacuucugcGuGCAGCGCg -3'
miRNA:   3'- -UGC-CGUUGAUG--UACCU-----------CuCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 163091 0.68 0.959643
Target:  5'- -aGGCGGCUACAUGaacuccaGGCcguGCGCCa -3'
miRNA:   3'- ugCCGUUGAUGUACcuc----UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 160891 0.66 0.990671
Target:  5'- cACGGUGACaaccugucACAUGG-GuGCAgacGCGCCa -3'
miRNA:   3'- -UGCCGUUGa-------UGUACCuCuCGU---CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 154478 0.69 0.934936
Target:  5'- uUGGCAACUGCGacaucggcagGGAGGGCAucCGUCg -3'
miRNA:   3'- uGCCGUUGAUGUa---------CCUCUCGUc-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 152297 0.66 0.990671
Target:  5'- uAUGGCuca---GUGGAuAGCAGCGUCa -3'
miRNA:   3'- -UGCCGuugaugUACCUcUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 138336 0.78 0.53864
Target:  5'- cGCGGCuGCUGCuGUGGAGAGgCcGCGUCg -3'
miRNA:   3'- -UGCCGuUGAUG-UACCUCUC-GuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 128447 0.69 0.948263
Target:  5'- aACGGU----GCGUGGAG-GCGGCGgCa -3'
miRNA:   3'- -UGCCGuugaUGUACCUCuCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 122649 0.67 0.979002
Target:  5'- aACGGCAugcuuccGCU-CGUGGAaaucGCGGcCGCCg -3'
miRNA:   3'- -UGCCGU-------UGAuGUACCUcu--CGUC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.