miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 214609 1.12 0.004827
Target:  5'- aACGGCAACUACAUGGAGAGCAGCGCCa -3'
miRNA:   3'- -UGCCGUUGAUGUACCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 308423 0.68 0.952269
Target:  5'- cCGGCGACcccgGCggGGcGGGC-GCGCCc -3'
miRNA:   3'- uGCCGUUGa---UGuaCCuCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 163091 0.68 0.959643
Target:  5'- -aGGCGGCUACAUGaacuccaGGCcguGCGCCa -3'
miRNA:   3'- ugCCGUUGAUGUACcuc----UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 152297 0.66 0.990671
Target:  5'- uAUGGCuca---GUGGAuAGCAGCGUCa -3'
miRNA:   3'- -UGCCGuugaugUACCUcUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 281945 0.74 0.761759
Target:  5'- cGCGGCAGgaGCA---GGGGCGGUGCCg -3'
miRNA:   3'- -UGCCGUUgaUGUaccUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 224168 0.71 0.869144
Target:  5'- gGCGGUGGCg--GUGGcgGGGGCAGUGCUg -3'
miRNA:   3'- -UGCCGUUGaugUACC--UCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 11333 0.71 0.869144
Target:  5'- aGCGGCGGCaGCA-GGAGcAGCgGGUGUCg -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCG-UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 259797 0.71 0.889666
Target:  5'- uCGaGCGAUguuCAUGGccaaggcGGGCAGCGCCg -3'
miRNA:   3'- uGC-CGUUGau-GUACCu------CUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 69049 0.7 0.924945
Target:  5'- gGCGGCggUgGCgGUGGuGucGGCGGUGCCg -3'
miRNA:   3'- -UGCCGuuGaUG-UACCuC--UCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 295304 0.68 0.951878
Target:  5'- uCGGUAguACUACAacuccccUGGcccuGCAGCGCCa -3'
miRNA:   3'- uGCCGU--UGAUGU-------ACCucu-CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 225574 0.69 0.948263
Target:  5'- -gGGCAGCUGgGgccggagcGGGGGGUGGUGCUg -3'
miRNA:   3'- ugCCGUUGAUgUa-------CCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 215203 0.7 0.924945
Target:  5'- -gGGacCAACUACGUGGAgGAGUuuGCGUCg -3'
miRNA:   3'- ugCC--GUUGAUGUACCU-CUCGu-CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 10377 0.76 0.656184
Target:  5'- uGCGGCGACggGgGUGGAGAagGCAGCGg- -3'
miRNA:   3'- -UGCCGUUGa-UgUACCUCU--CGUCGCgg -5'
10536 3' -54.8 NC_002687.1 + 179979 0.69 0.948263
Target:  5'- gGCGcGCGGCUACgaGUGGGaccacuucugcGuGCAGCGCg -3'
miRNA:   3'- -UGC-CGUUGAUG--UACCU-----------CuCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 283183 0.74 0.733788
Target:  5'- aGCGGCAGCaACA-GGGGcGGCAGCaCCa -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCGUCGcGG- -5'
10536 3' -54.8 NC_002687.1 + 293200 0.7 0.919615
Target:  5'- -aGGUAGC--CGUGGAGcuGCAGCGCa -3'
miRNA:   3'- ugCCGUUGauGUACCUCu-CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 128447 0.69 0.948263
Target:  5'- aACGGU----GCGUGGAG-GCGGCGgCa -3'
miRNA:   3'- -UGCCGuugaUGUACCUCuCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 205962 0.68 0.952269
Target:  5'- aGCGGgAugUACG-GGAGAGCcgugaacacGGUGUCg -3'
miRNA:   3'- -UGCCgUugAUGUaCCUCUCG---------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 282158 0.74 0.752532
Target:  5'- uGCGGCGGCaGCGgcGGGAGUAGgGCCu -3'
miRNA:   3'- -UGCCGUUGaUGUacCUCUCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 281187 0.71 0.869144
Target:  5'- gGCGGCGGaagUACAUGG--GGUGGUGCCa -3'
miRNA:   3'- -UGCCGUUg--AUGUACCucUCGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.