miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 71360 0.68 0.961693
Target:  5'- cACGGcCGAUgucgaucgaucugACAUGGcccgcaguGAGCGGUGCCa -3'
miRNA:   3'- -UGCC-GUUGa------------UGUACCu-------CUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 281798 0.68 0.959643
Target:  5'- aACGGCGGggGCA-GGGGccGgGGCGCCa -3'
miRNA:   3'- -UGCCGUUgaUGUaCCUCu-CgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 295304 0.68 0.951878
Target:  5'- uCGGUAguACUACAacuccccUGGcccuGCAGCGCCa -3'
miRNA:   3'- uGCCGU--UGAUGU-------ACCucu-CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 293200 0.7 0.919615
Target:  5'- -aGGUAGC--CGUGGAGcuGCAGCGCa -3'
miRNA:   3'- ugCCGUUGauGUACCUCu-CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 38085 0.67 0.976973
Target:  5'- -gGaGCAGCUcaaccACAUGuGGGAGCgGGCGCa -3'
miRNA:   3'- ugC-CGUUGA-----UGUAC-CUCUCG-UCGCGg -5'
10536 3' -54.8 NC_002687.1 + 260555 0.68 0.968297
Target:  5'- gGCGGCAGCggcuCAUGGgaugaGGAGUgggucgaucacguuGGCgGCCa -3'
miRNA:   3'- -UGCCGUUGau--GUACC-----UCUCG--------------UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 163091 0.68 0.959643
Target:  5'- -aGGCGGCUACAUGaacuccaGGCcguGCGCCa -3'
miRNA:   3'- ugCCGUUGAUGUACcuc----UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 259797 0.71 0.889666
Target:  5'- uCGaGCGAUguuCAUGGccaaggcGGGCAGCGCCg -3'
miRNA:   3'- uGC-CGUUGau-GUACCu------CUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 275230 0.68 0.967407
Target:  5'- aGCGGCAcaacacggaagguguGCaguCAUGGAGGuGCucauguacgcaGGCGCCg -3'
miRNA:   3'- -UGCCGU---------------UGau-GUACCUCU-CG-----------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 11333 0.71 0.869144
Target:  5'- aGCGGCGGCaGCA-GGAGcAGCgGGUGUCg -3'
miRNA:   3'- -UGCCGUUGaUGUaCCUC-UCG-UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 216642 0.68 0.959643
Target:  5'- -gGGCGACUAC-UGG-GGGUGGacaCGCCg -3'
miRNA:   3'- ugCCGUUGAUGuACCuCUCGUC---GCGG- -5'
10536 3' -54.8 NC_002687.1 + 108732 0.68 0.963019
Target:  5'- gAUGGCAcuGCuUGCAUGGGaccaAGCAGagaGCCa -3'
miRNA:   3'- -UGCCGU--UG-AUGUACCUc---UCGUCg--CGG- -5'
10536 3' -54.8 NC_002687.1 + 205962 0.68 0.952269
Target:  5'- aGCGGgAugUACG-GGAGAGCcgugaacacGGUGUCg -3'
miRNA:   3'- -UGCCgUugAUGUaCCUCUCG---------UCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 308423 0.68 0.952269
Target:  5'- cCGGCGACcccgGCggGGcGGGC-GCGCCc -3'
miRNA:   3'- uGCCGUUGa---UGuaCCuCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 225574 0.69 0.948263
Target:  5'- -gGGCAGCUGgGgccggagcGGGGGGUGGUGCUg -3'
miRNA:   3'- ugCCGUUGAUgUa-------CCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 215203 0.7 0.924945
Target:  5'- -gGGacCAACUACGUGGAgGAGUuuGCGUCg -3'
miRNA:   3'- ugCC--GUUGAUGUACCU-CUCGu-CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 225061 0.66 0.983217
Target:  5'- cCGGCAgcugggGCUGCAgccGGAGAggaacgugGUGGCGCa -3'
miRNA:   3'- uGCCGU------UGAUGUa--CCUCU--------CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 122649 0.67 0.979002
Target:  5'- aACGGCAugcuuccGCU-CGUGGAaaucGCGGcCGCCg -3'
miRNA:   3'- -UGCCGU-------UGAuGUACCUcu--CGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 275491 0.67 0.971685
Target:  5'- uGCGGCGGCUuCGacGGAGgaaugguAGCucuGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUa-CCUC-------UCGu--CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 278955 0.68 0.96917
Target:  5'- gUGGCAGC-GCAggGGGGGGCAGaC-CCa -3'
miRNA:   3'- uGCCGUUGaUGUa-CCUCUCGUC-GcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.