miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 37090 0.66 0.988645
Target:  5'- aAUGGUggUUGcCAUGGugaaggugaauuguGAGCAGCGUg -3'
miRNA:   3'- -UGCCGuuGAU-GUACCu-------------CUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 27773 0.67 0.971955
Target:  5'- -gGGUAGCUaGCA-GGGGuguuGCGGCGCg -3'
miRNA:   3'- ugCCGUUGA-UGUaCCUCu---CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 319240 0.68 0.951485
Target:  5'- aACGGCAGCUuCAgGGcaaagaaAGGGCAcgccuccGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUaCC-------UCUCGU-------CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 305908 0.69 0.94404
Target:  5'- uCGuGCGugUAgAaaGGAGAGgAGCGCCg -3'
miRNA:   3'- uGC-CGUugAUgUa-CCUCUCgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 11318 0.75 0.714716
Target:  5'- -aGGCGAUaUACAUGGGGGGCGGgacaguUGCCg -3'
miRNA:   3'- ugCCGUUG-AUGUACCUCUCGUC------GCGG- -5'
10536 3' -54.8 NC_002687.1 + 332257 0.73 0.77088
Target:  5'- gGCGGCGGCgcuuggGCGUGGAGGcgauuGCGGCaucaugaccaccGCCg -3'
miRNA:   3'- -UGCCGUUGa-----UGUACCUCU-----CGUCG------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 288761 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 287168 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 287682 0.73 0.806131
Target:  5'- aGCGaGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC-CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 333128 0.72 0.839035
Target:  5'- -aGGCgAGCUACA-GGaAGAGUGGCGCg -3'
miRNA:   3'- ugCCG-UUGAUGUaCC-UCUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 61439 0.72 0.854464
Target:  5'- uCGGCAGCacggACGUGGAGAcCGGaCGCg -3'
miRNA:   3'- uGCCGUUGa---UGUACCUCUcGUC-GCGg -5'
10536 3' -54.8 NC_002687.1 + 2655 0.72 0.854464
Target:  5'- uUGGCGGCa--AUGGGGAGguGCGUg -3'
miRNA:   3'- uGCCGUUGaugUACCUCUCguCGCGg -5'
10536 3' -54.8 NC_002687.1 + 39921 0.71 0.883031
Target:  5'- gGauGCAGCaGCGUGuAGAGCAGuCGCCu -3'
miRNA:   3'- -UgcCGUUGaUGUACcUCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 307788 0.7 0.902299
Target:  5'- gACGGCAGCgaugGUGauGAGGGCAGCGaCg -3'
miRNA:   3'- -UGCCGUUGaug-UAC--CUCUCGUCGCgG- -5'
10536 3' -54.8 NC_002687.1 + 295106 0.7 0.921774
Target:  5'- cGCGaGCGGCgcgcGCGcGGGGAGCAGCcaaaugaucucggugGCCg -3'
miRNA:   3'- -UGC-CGUUGa---UGUaCCUCUCGUCG---------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 297303 0.7 0.927015
Target:  5'- cGCGuGCGGCgcGCGcGGGGAGCAGCcaaaugaucucgaugGCCg -3'
miRNA:   3'- -UGC-CGUUGa-UGUaCCUCUCGUCG---------------CGG- -5'
10536 3' -54.8 NC_002687.1 + 154478 0.69 0.934936
Target:  5'- uUGGCAACUGCGacaucggcagGGAGGGCAucCGUCg -3'
miRNA:   3'- uGCCGUUGAUGUa---------CCUCUCGUc-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 211370 0.69 0.934936
Target:  5'- gACGGC-ACUAUGUcccuacGGAGAGCgcGGCuGCCc -3'
miRNA:   3'- -UGCCGuUGAUGUA------CCUCUCG--UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 64070 0.69 0.939599
Target:  5'- gACcGCGAa-ACGUGGAGAGCcGUGCUg -3'
miRNA:   3'- -UGcCGUUgaUGUACCUCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 237091 0.69 0.939599
Target:  5'- cGCGGCuuCcGCGgaugaUGGAcGAauGCAGCGCCu -3'
miRNA:   3'- -UGCCGuuGaUGU-----ACCU-CU--CGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.