miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10536 3' -54.8 NC_002687.1 + 211370 0.69 0.934936
Target:  5'- gACGGC-ACUAUGUcccuacGGAGAGCgcGGCuGCCc -3'
miRNA:   3'- -UGCCGuUGAUGUA------CCUCUCG--UCG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 224735 0.67 0.971955
Target:  5'- uCGGCAucgGCAUcGGGAGUAGCaucGCCa -3'
miRNA:   3'- uGCCGUugaUGUAcCUCUCGUCG---CGG- -5'
10536 3' -54.8 NC_002687.1 + 264080 0.68 0.966193
Target:  5'- gAUGG-AACgucuccACGUGucGAGAGCGGUGCCa -3'
miRNA:   3'- -UGCCgUUGa-----UGUAC--CUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 291702 0.68 0.952269
Target:  5'- aGCGGCAGCaGCAgc---AGCAGCGCa -3'
miRNA:   3'- -UGCCGUUGaUGUaccucUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 287810 0.68 0.952269
Target:  5'- aGCGacGCAGCUucacACAUGGuGGGGUAGaUGCCa -3'
miRNA:   3'- -UGC--CGUUGA----UGUACC-UCUCGUC-GCGG- -5'
10536 3' -54.8 NC_002687.1 + 319240 0.68 0.951485
Target:  5'- aACGGCAGCUuCAgGGcaaagaaAGGGCAcgccuccGCGCCu -3'
miRNA:   3'- -UGCCGUUGAuGUaCC-------UCUCGU-------CGCGG- -5'
10536 3' -54.8 NC_002687.1 + 305908 0.69 0.94404
Target:  5'- uCGuGCGugUAgAaaGGAGAGgAGCGCCg -3'
miRNA:   3'- uGC-CGUugAUgUa-CCUCUCgUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 237091 0.69 0.939599
Target:  5'- cGCGGCuuCcGCGgaugaUGGAcGAauGCAGCGCCu -3'
miRNA:   3'- -UGCCGuuGaUGU-----ACCU-CU--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 64070 0.69 0.939599
Target:  5'- gACcGCGAa-ACGUGGAGAGCcGUGCUg -3'
miRNA:   3'- -UGcCGUUgaUGUACCUCUCGuCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 182412 0.67 0.971955
Target:  5'- -gGGCAACgcucggGCAaccuUGGAGAgGCAcGCuGCCg -3'
miRNA:   3'- ugCCGUUGa-----UGU----ACCUCU-CGU-CG-CGG- -5'
10536 3' -54.8 NC_002687.1 + 27773 0.67 0.971955
Target:  5'- -gGGUAGCUaGCA-GGGGuguuGCGGCGCg -3'
miRNA:   3'- ugCCGUUGA-UGUaCCUCu---CGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 55500 0.67 0.974554
Target:  5'- -gGGguGCgugGCAUGGuuacGAGCAcGCGCa -3'
miRNA:   3'- ugCCguUGa--UGUACCu---CUCGU-CGCGg -5'
10536 3' -54.8 NC_002687.1 + 78125 0.66 0.989312
Target:  5'- uCGGCAACaGCgGUGGuGuuucggccguggcGGCGGCGUCu -3'
miRNA:   3'- uGCCGUUGaUG-UACCuC-------------UCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 37090 0.66 0.988645
Target:  5'- aAUGGUggUUGcCAUGGugaaggugaauuguGAGCAGCGUg -3'
miRNA:   3'- -UGCCGuuGAU-GUACCu-------------CUCGUCGCGg -5'
10536 3' -54.8 NC_002687.1 + 285085 0.66 0.988089
Target:  5'- -gGGgAACgUACAUGGGGAuUAGCGaCCc -3'
miRNA:   3'- ugCCgUUG-AUGUACCUCUcGUCGC-GG- -5'
10536 3' -54.8 NC_002687.1 + 21330 0.66 0.986605
Target:  5'- uCGGCGcCUuc--GGAGAGCAGUGUUu -3'
miRNA:   3'- uGCCGUuGAuguaCCUCUCGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 86077 0.66 0.986605
Target:  5'- aGCGGggcCAGCgggGCcaGUGGGGccAGCGGgGCCa -3'
miRNA:   3'- -UGCC---GUUGa--UG--UACCUC--UCGUCgCGG- -5'
10536 3' -54.8 NC_002687.1 + 234218 0.66 0.986605
Target:  5'- uCGGCcGCUuuaaGCAUGGccuuuGCGGCGUCu -3'
miRNA:   3'- uGCCGuUGA----UGUACCucu--CGUCGCGG- -5'
10536 3' -54.8 NC_002687.1 + 248169 0.66 0.986605
Target:  5'- gACGGCGAaccaUACAcgugGGAGGGCgAGUucgGCUg -3'
miRNA:   3'- -UGCCGUUg---AUGUa---CCUCUCG-UCG---CGG- -5'
10536 3' -54.8 NC_002687.1 + 4376 0.66 0.983032
Target:  5'- cACGGguGCc-CGUGGGGAauguuaaaaauugGUAGCGUCg -3'
miRNA:   3'- -UGCCguUGauGUACCUCU-------------CGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.