miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10538 3' -55.8 NC_002687.1 + 80776 0.66 0.984487
Target:  5'- aGCAGUaGGuagcCcGCCACGGCCAG-GACAa -3'
miRNA:   3'- cUGUCA-CU----GcCGGUGCUGGUCaCUGU- -5'
10538 3' -55.8 NC_002687.1 + 102758 0.66 0.984487
Target:  5'- cGACAGcGACGGCgacaGCGACggcgaCAGcGACAg -3'
miRNA:   3'- -CUGUCaCUGCCGg---UGCUG-----GUCaCUGU- -5'
10538 3' -55.8 NC_002687.1 + 226401 0.66 0.984141
Target:  5'- gGACAGggggguggugugGGCGGCCGgGACgAGgaGACGg -3'
miRNA:   3'- -CUGUCa-----------CUGCCGGUgCUGgUCa-CUGU- -5'
10538 3' -55.8 NC_002687.1 + 84706 0.66 0.978665
Target:  5'- cGACGuUGACGGUUGCGGCggacuCAGUGAUc -3'
miRNA:   3'- -CUGUcACUGCCGGUGCUG-----GUCACUGu -5'
10538 3' -55.8 NC_002687.1 + 84375 0.67 0.968574
Target:  5'- cGACGGUGACGGauaaccUCACGgucACCGGaGACu -3'
miRNA:   3'- -CUGUCACUGCC------GGUGC---UGGUCaCUGu -5'
10538 3' -55.8 NC_002687.1 + 241048 0.67 0.968574
Target:  5'- cGACAGUGACaGUCG-GAUCGG-GACAc -3'
miRNA:   3'- -CUGUCACUGcCGGUgCUGGUCaCUGU- -5'
10538 3' -55.8 NC_002687.1 + 170153 0.67 0.968574
Target:  5'- -uCGGcGuCGGCCACGACaCGGUGGa- -3'
miRNA:   3'- cuGUCaCuGCCGGUGCUG-GUCACUgu -5'
10538 3' -55.8 NC_002687.1 + 307643 0.67 0.962423
Target:  5'- cGGCGGUGGCGGUgguggugcuggCACGGgCGGcGGCGg -3'
miRNA:   3'- -CUGUCACUGCCG-----------GUGCUgGUCaCUGU- -5'
10538 3' -55.8 NC_002687.1 + 298338 0.67 0.962423
Target:  5'- aGCGGUGGCGGCCGCaACgcaAG-GGCGu -3'
miRNA:   3'- cUGUCACUGCCGGUGcUGg--UCaCUGU- -5'
10538 3' -55.8 NC_002687.1 + 84908 0.67 0.962423
Target:  5'- uACAGcaccGACGGCacgACGauGCCGGUGACGu -3'
miRNA:   3'- cUGUCa---CUGCCGg--UGC--UGGUCACUGU- -5'
10538 3' -55.8 NC_002687.1 + 290911 0.67 0.961433
Target:  5'- cGGCAGUGcaguCGGCCACGAgagagaacguagagUCAGgcgGGCu -3'
miRNA:   3'- -CUGUCACu---GCCGGUGCU--------------GGUCa--CUGu -5'
10538 3' -55.8 NC_002687.1 + 126551 0.67 0.959053
Target:  5'- cGCGGgcguCuGUCGCGACCGGUGGCGg -3'
miRNA:   3'- cUGUCacu-GcCGGUGCUGGUCACUGU- -5'
10538 3' -55.8 NC_002687.1 + 2376 0.68 0.947715
Target:  5'- cGAuCGGUGucgguCGGCCACGcCCAGgaguUGGCGu -3'
miRNA:   3'- -CU-GUCACu----GCCGGUGCuGGUC----ACUGU- -5'
10538 3' -55.8 NC_002687.1 + 101021 0.68 0.943516
Target:  5'- cGACGGUGAaGGCgGC-ACCGGUGuCGa -3'
miRNA:   3'- -CUGUCACUgCCGgUGcUGGUCACuGU- -5'
10538 3' -55.8 NC_002687.1 + 10328 0.69 0.92963
Target:  5'- cGGCAGUGGCGGCgGCaguu-GUGGCAg -3'
miRNA:   3'- -CUGUCACUGCCGgUGcugguCACUGU- -5'
10538 3' -55.8 NC_002687.1 + 224931 0.69 0.92963
Target:  5'- aGACAGUGAUGGCaagcguGCGugCGGUcGAg- -3'
miRNA:   3'- -CUGUCACUGCCGg-----UGCugGUCA-CUgu -5'
10538 3' -55.8 NC_002687.1 + 200119 0.69 0.92963
Target:  5'- cGGCGacGACGGCCGCGcGCCGuUGACGa -3'
miRNA:   3'- -CUGUcaCUGCCGGUGC-UGGUcACUGU- -5'
10538 3' -55.8 NC_002687.1 + 307708 0.69 0.924567
Target:  5'- cGAUGGUGACGGCaucaACGAaggcaguGGUGACGa -3'
miRNA:   3'- -CUGUCACUGCCGg---UGCUgg-----UCACUGU- -5'
10538 3' -55.8 NC_002687.1 + 298411 0.69 0.918206
Target:  5'- cGCGGcGGCGGCCGCGGCCuuaucaauugGGCGc -3'
miRNA:   3'- cUGUCaCUGCCGGUGCUGGuca-------CUGU- -5'
10538 3' -55.8 NC_002687.1 + 239095 0.69 0.913791
Target:  5'- -cCAGaUGGCGGCCAUGAUCcGUGcCAa -3'
miRNA:   3'- cuGUC-ACUGCCGGUGCUGGuCACuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.