Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10538 | 3' | -55.8 | NC_002687.1 | + | 2376 | 0.68 | 0.947715 |
Target: 5'- cGAuCGGUGucgguCGGCCACGcCCAGgaguUGGCGu -3' miRNA: 3'- -CU-GUCACu----GCCGGUGCuGGUC----ACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 3249 | 0.69 | 0.908079 |
Target: 5'- --uGGUGACGGCCAgguuuCGACCAccgaUGGCGa -3' miRNA: 3'- cugUCACUGCCGGU-----GCUGGUc---ACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 10328 | 0.69 | 0.92963 |
Target: 5'- cGGCAGUGGCGGCgGCaguu-GUGGCAg -3' miRNA: 3'- -CUGUCACUGCCGgUGcugguCACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 12112 | 0.7 | 0.902153 |
Target: 5'- aGCGGgaaGCGGCCAaGGCCGGUGAg- -3' miRNA: 3'- cUGUCac-UGCCGGUgCUGGUCACUgu -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 80776 | 0.66 | 0.984487 |
Target: 5'- aGCAGUaGGuagcCcGCCACGGCCAG-GACAa -3' miRNA: 3'- cUGUCA-CU----GcCGGUGCUGGUCaCUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 84375 | 0.67 | 0.968574 |
Target: 5'- cGACGGUGACGGauaaccUCACGgucACCGGaGACu -3' miRNA: 3'- -CUGUCACUGCC------GGUGC---UGGUCaCUGu -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 84706 | 0.66 | 0.978665 |
Target: 5'- cGACGuUGACGGUUGCGGCggacuCAGUGAUc -3' miRNA: 3'- -CUGUcACUGCCGGUGCUG-----GUCACUGu -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 84908 | 0.67 | 0.962423 |
Target: 5'- uACAGcaccGACGGCacgACGauGCCGGUGACGu -3' miRNA: 3'- cUGUCa---CUGCCGg--UGC--UGGUCACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 101021 | 0.68 | 0.943516 |
Target: 5'- cGACGGUGAaGGCgGC-ACCGGUGuCGa -3' miRNA: 3'- -CUGUCACUgCCGgUGcUGGUCACuGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 102758 | 0.66 | 0.984487 |
Target: 5'- cGACAGcGACGGCgacaGCGACggcgaCAGcGACAg -3' miRNA: 3'- -CUGUCaCUGCCGg---UGCUG-----GUCaCUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 111683 | 0.7 | 0.869405 |
Target: 5'- -uCGGUGAUGGCCGCGAUgu-UGACAc -3' miRNA: 3'- cuGUCACUGCCGGUGCUGgucACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 126551 | 0.67 | 0.959053 |
Target: 5'- cGCGGgcguCuGUCGCGACCGGUGGCGg -3' miRNA: 3'- cUGUCacu-GcCGGUGCUGGUCACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 170153 | 0.67 | 0.968574 |
Target: 5'- -uCGGcGuCGGCCACGACaCGGUGGa- -3' miRNA: 3'- cuGUCaCuGCCGGUGCUG-GUCACUgu -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 200119 | 0.69 | 0.92963 |
Target: 5'- cGGCGacGACGGCCGCGcGCCGuUGACGa -3' miRNA: 3'- -CUGUcaCUGCCGGUGC-UGGUcACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 211025 | 0.69 | 0.908079 |
Target: 5'- ---cGUGGcCGGCCucuGCGACCAGUG-CAa -3' miRNA: 3'- cuguCACU-GCCGG---UGCUGGUCACuGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 215315 | 1.08 | 0.007328 |
Target: 5'- cGACAGUGACGGCCACGACCAGUGACAu -3' miRNA: 3'- -CUGUCACUGCCGGUGCUGGUCACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 224137 | 0.69 | 0.906324 |
Target: 5'- uGGCGGUGGCGGUgGCGcuggcgcuggcgcuGgCGGUGGCGg -3' miRNA: 3'- -CUGUCACUGCCGgUGC--------------UgGUCACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 224197 | 0.74 | 0.678814 |
Target: 5'- uGGCGGUGGCGGUgGCGGuggCGGUGGCGg -3' miRNA: 3'- -CUGUCACUGCCGgUGCUg--GUCACUGU- -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 224931 | 0.69 | 0.92963 |
Target: 5'- aGACAGUGAUGGCaagcguGCGugCGGUcGAg- -3' miRNA: 3'- -CUGUCACUGCCGg-----UGCugGUCA-CUgu -5' |
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10538 | 3' | -55.8 | NC_002687.1 | + | 226401 | 0.66 | 0.984141 |
Target: 5'- gGACAGggggguggugugGGCGGCCGgGACgAGgaGACGg -3' miRNA: 3'- -CUGUCa-----------CUGCCGGUgCUGgUCa-CUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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