Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10539 | 3' | -59.6 | NC_002687.1 | + | 224086 | 0.66 | 0.863553 |
Target: 5'- uGGUGgUGGUGCUGgcggacguuCGGGaCGCGGUGg -3' miRNA: 3'- uUCGCaACCGCGAC---------GCCC-GUGCCAUu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 173612 | 0.68 | 0.783041 |
Target: 5'- gAGGCGgaGGCGgagGCGGGgGCGGa-- -3' miRNA: 3'- -UUCGCaaCCGCga-CGCCCgUGCCauu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 173588 | 0.68 | 0.783041 |
Target: 5'- gAGGCGgaGGCGgagGCGGGgGCGGa-- -3' miRNA: 3'- -UUCGCaaCCGCga-CGCCCgUGCCauu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 132921 | 0.69 | 0.718967 |
Target: 5'- gAGGcCGUUGGCGCUGCaGGCAUu---- -3' miRNA: 3'- -UUC-GCAACCGCGACGcCCGUGccauu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 224155 | 0.69 | 0.699933 |
Target: 5'- uGGCGcUGGCGCUgGCGGugGCGGUGg -3' miRNA: 3'- uUCGCaACCGCGA-CGCCcgUGCCAUu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 224125 | 0.69 | 0.699933 |
Target: 5'- uGGCGcUGGCGCUgGCGGugGCGGUGg -3' miRNA: 3'- uUCGCaACCGCGA-CGCCcgUGCCAUu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 217428 | 1.03 | 0.005828 |
Target: 5'- cAAGCGUUGGCGCUGCGGGCACGGUAAc -3' miRNA: 3'- -UUCGCAACCGCGACGCCCGUGCCAUU- -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 154535 | 0.77 | 0.292731 |
Target: 5'- gAAGCGUUGGCGCguugGUGGcCAUGGUGAc -3' miRNA: 3'- -UUCGCAACCGCGa---CGCCcGUGCCAUU- -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 205442 | 0.72 | 0.535637 |
Target: 5'- uGGCGgugucgUGGgacaCGCUGUGGGCACGGa-- -3' miRNA: 3'- uUCGCa-----ACC----GCGACGCCCGUGCCauu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 292791 | 0.71 | 0.622335 |
Target: 5'- gAAGCGgUGGCgGCcGCGGcGCACGGg-- -3' miRNA: 3'- -UUCGCaACCG-CGaCGCC-CGUGCCauu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 307637 | 0.69 | 0.699933 |
Target: 5'- uGGCGguggUGGUGCUGgcaCGGGCggcgGCGGUGc -3' miRNA: 3'- uUCGCa---ACCGCGAC---GCCCG----UGCCAUu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 160920 | 0.67 | 0.80036 |
Target: 5'- uAAG-GUUGGgGCUGgGGGC-UGGUGGa -3' miRNA: 3'- -UUCgCAACCgCGACgCCCGuGCCAUU- -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 280127 | 0.67 | 0.817126 |
Target: 5'- uAGCcUUGcGUGCUGCGGGCugGuugcGUAAu -3' miRNA: 3'- uUCGcAAC-CGCGACGCCCGugC----CAUU- -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 208521 | 0.66 | 0.863553 |
Target: 5'- --cCGUUGuuGCUGuCGGGCACGGc-- -3' miRNA: 3'- uucGCAACcgCGAC-GCCCGUGCCauu -5' |
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10539 | 3' | -59.6 | NC_002687.1 | + | 11414 | 0.66 | 0.883627 |
Target: 5'- cGGGCGUUGuGUGUggUGCGGcgcaagacuugguGCugGGUGAg -3' miRNA: 3'- -UUCGCAAC-CGCG--ACGCC-------------CGugCCAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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