miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1054 3' -54.8 NC_000929.1 + 30191 0.68 0.478027
Target:  5'- gGAACGaCGGaAAuuaccguuaccGCACuGGCUGCCGGUg -3'
miRNA:   3'- -CUUGCcGCCaUU-----------UGUG-CCGACGGUCA- -5'
1054 3' -54.8 NC_000929.1 + 21953 0.66 0.599965
Target:  5'- gGGACGGCaccGGU-AAUGCuGCUGUCGGUg -3'
miRNA:   3'- -CUUGCCG---CCAuUUGUGcCGACGGUCA- -5'
1054 3' -54.8 NC_000929.1 + 31007 0.66 0.599965
Target:  5'- -uGCGGCGGaUGAuGCGCGGCaaaugcUGCgGGa -3'
miRNA:   3'- cuUGCCGCC-AUU-UGUGCCG------ACGgUCa -5'
1054 3' -54.8 NC_000929.1 + 25636 0.66 0.565853
Target:  5'- gGAACGGuCGGaAAGC-UGGCugaUGCCGGg -3'
miRNA:   3'- -CUUGCC-GCCaUUUGuGCCG---ACGGUCa -5'
1054 3' -54.8 NC_000929.1 + 6048 0.67 0.552341
Target:  5'- cGAACGGCGGcaaagUGAAgACGGCgaaucuugucaCCGGUg -3'
miRNA:   3'- -CUUGCCGCC-----AUUUgUGCCGac---------GGUCA- -5'
1054 3' -54.8 NC_000929.1 + 19868 0.67 0.521222
Target:  5'- uGAUGGCGGUAagaAACugGGCcugaaGCCGa- -3'
miRNA:   3'- cUUGCCGCCAU---UUGugCCGa----CGGUca -5'
1054 3' -54.8 NC_000929.1 + 11056 1.08 0.000703
Target:  5'- aGAACGGCGGUAAACACGGCUGCCAGUa -3'
miRNA:   3'- -CUUGCCGCCAUUUGUGCCGACGGUCA- -5'
1054 3' -54.8 NC_000929.1 + 3093 0.7 0.351728
Target:  5'- uGGCGGCGGcGAuauuCACGGCcUGCCGc- -3'
miRNA:   3'- cUUGCCGCCaUUu---GUGCCG-ACGGUca -5'
1054 3' -54.8 NC_000929.1 + 16141 0.68 0.488667
Target:  5'- --uUGGCGGgaggcGCGCGGCauacGCCAGa -3'
miRNA:   3'- cuuGCCGCCauu--UGUGCCGa---CGGUCa -5'
1054 3' -54.8 NC_000929.1 + 29531 0.67 0.525628
Target:  5'- --cCGGuCGGUAAACAgagagauugucacauCGGUUGUCAGg -3'
miRNA:   3'- cuuGCC-GCCAUUUGU---------------GCCGACGGUCa -5'
1054 3' -54.8 NC_000929.1 + 16250 0.66 0.577177
Target:  5'- cGggUGGCuuuggcaacGGUAAagGCGCGGgcgugcgcguCUGCCAGUu -3'
miRNA:   3'- -CuuGCCG---------CCAUU--UGUGCC----------GACGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.