miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10542 3' -53.8 NC_002687.1 + 228017 0.66 0.992779
Target:  5'- cGuGUUAcguUGCAGCACGaUUCAgCGUGc -3'
miRNA:   3'- aCuCGAU---ACGUCGUGCaGAGUgGCAC- -5'
10542 3' -53.8 NC_002687.1 + 249093 0.66 0.992779
Target:  5'- aGAGCgucgGUGUGGCAUGUgUCAUCc-- -3'
miRNA:   3'- aCUCGa---UACGUCGUGCAgAGUGGcac -5'
10542 3' -53.8 NC_002687.1 + 295693 0.66 0.992779
Target:  5'- aGAGCgcgGUGCAGCggagcaGCGgggCUgaUGCCGUGc -3'
miRNA:   3'- aCUCGa--UACGUCG------UGCa--GA--GUGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 203138 0.66 0.991761
Target:  5'- gGAGgaGUGCAGCAgGaUCUCugCu-- -3'
miRNA:   3'- aCUCgaUACGUCGUgC-AGAGugGcac -5'
10542 3' -53.8 NC_002687.1 + 203711 0.66 0.991761
Target:  5'- aGAGCUGcugaacgggGcCAGCACGgaaUCAuCCGUGg -3'
miRNA:   3'- aCUCGAUa--------C-GUCGUGCag-AGU-GGCAC- -5'
10542 3' -53.8 NC_002687.1 + 45948 0.66 0.991761
Target:  5'- cUGAGauggauUGCAGCugGUgUCGCaGUGa -3'
miRNA:   3'- -ACUCgau---ACGUCGugCAgAGUGgCAC- -5'
10542 3' -53.8 NC_002687.1 + 226438 0.66 0.990633
Target:  5'- -cGGCUAcgcagGCAGCugGagCUC-CCGUGg -3'
miRNA:   3'- acUCGAUa----CGUCGugCa-GAGuGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 329903 0.67 0.988016
Target:  5'- cGAuGCUGUGCAgGCACG---CGCUGUGa -3'
miRNA:   3'- aCU-CGAUACGU-CGUGCagaGUGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 35542 0.67 0.986511
Target:  5'- cGAGCUcgGCGuaCACGUCaggCACCGc- -3'
miRNA:   3'- aCUCGAuaCGUc-GUGCAGa--GUGGCac -5'
10542 3' -53.8 NC_002687.1 + 81612 0.67 0.984865
Target:  5'- aGAGUUGUGUGGCGCauuUCggaCACCGUu -3'
miRNA:   3'- aCUCGAUACGUCGUGc--AGa--GUGGCAc -5'
10542 3' -53.8 NC_002687.1 + 335092 0.68 0.97672
Target:  5'- gGAGCUAUGCAGUGUGUU---CCGUGc -3'
miRNA:   3'- aCUCGAUACGUCGUGCAGaguGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 334530 0.68 0.97672
Target:  5'- gGAGCUAUGCAGUGUGUU---CCGUGc -3'
miRNA:   3'- aCUCGAUACGUCGUGCAGaguGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 230200 0.68 0.97672
Target:  5'- uUGuGUUAUcCAGCACGcCUCAgCGUGc -3'
miRNA:   3'- -ACuCGAUAcGUCGUGCaGAGUgGCAC- -5'
10542 3' -53.8 NC_002687.1 + 251389 0.69 0.951549
Target:  5'- cGAGCUGUcguugaaaGcCAGCACGUUgucgaucaugUCGCUGUGg -3'
miRNA:   3'- aCUCGAUA--------C-GUCGUGCAG----------AGUGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 335 0.7 0.947464
Target:  5'- gGAGCUAUGCGGU--GUgUC-CCGUGc -3'
miRNA:   3'- aCUCGAUACGUCGugCAgAGuGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 862 0.7 0.947464
Target:  5'- gGAGCUAUGCGGU--GUgUC-CCGUGc -3'
miRNA:   3'- aCUCGAUACGUCGugCAgAGuGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 128784 0.7 0.943158
Target:  5'- aUGAGUacgaCAGCAUGUUUUGCCGUGg -3'
miRNA:   3'- -ACUCGauacGUCGUGCAGAGUGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 227640 0.7 0.928892
Target:  5'- gUGAuGCUGUGUAGCACG-CUgaAUCGUGc -3'
miRNA:   3'- -ACU-CGAUACGUCGUGCaGAg-UGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 1388 0.71 0.912588
Target:  5'- gGAGCUAUGCAGU--GUgUC-CCGUGc -3'
miRNA:   3'- aCUCGAUACGUCGugCAgAGuGGCAC- -5'
10542 3' -53.8 NC_002687.1 + 305849 0.71 0.912588
Target:  5'- -cAGCUGcuugccugugGCAGCAUGUuggCUCACCGUGu -3'
miRNA:   3'- acUCGAUa---------CGUCGUGCA---GAGUGGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.