miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10544 5' -46.2 NC_002687.1 + 115161 0.66 1
Target:  5'- cUCGCGGcUAUGUUGUGgaGCaUCGCc -3'
miRNA:   3'- uAGUGCU-AUAUAGCACaaUGcAGCGu -5'
10544 5' -46.2 NC_002687.1 + 281231 0.66 1
Target:  5'- cGUCACGAaugcUGU-UCGUGccGCGUUGCu -3'
miRNA:   3'- -UAGUGCU----AUAuAGCACaaUGCAGCGu -5'
10544 5' -46.2 NC_002687.1 + 72556 0.66 1
Target:  5'- --gGCGGUGUGUCGgcggcgGcgGCGUCgGCAc -3'
miRNA:   3'- uagUGCUAUAUAGCa-----CaaUGCAG-CGU- -5'
10544 5' -46.2 NC_002687.1 + 229377 0.67 0.999998
Target:  5'- cUCACcGUGcuaccugcaccaCGUGUUACGUCGCAa -3'
miRNA:   3'- uAGUGcUAUaua---------GCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229291 0.67 0.999998
Target:  5'- -gCACGAcaaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUauaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 309118 0.68 0.999994
Target:  5'- ---gUGGUAUGUCGUGggcaagaguCGUCGCAc -3'
miRNA:   3'- uaguGCUAUAUAGCACaau------GCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 54876 0.7 0.999878
Target:  5'- -gCACGAUAaAUCGUa-UACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcaAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 316279 0.7 0.999878
Target:  5'- gGUCAUGAUGgcgGUgGUGcaAUGUCGCAc -3'
miRNA:   3'- -UAGUGCUAUa--UAgCACaaUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230344 0.7 0.999843
Target:  5'- -aCACGAUAUAUCGUGaUGCaGguaGCAc -3'
miRNA:   3'- uaGUGCUAUAUAGCACaAUG-Cag-CGU- -5'
10544 5' -46.2 NC_002687.1 + 50899 0.72 0.99924
Target:  5'- cUgGCGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uAgUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 50013 0.72 0.99924
Target:  5'- cUgGCGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uAgUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228027 0.73 0.997658
Target:  5'- --aACGcuugAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uagUGCuauaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 295862 0.74 0.997225
Target:  5'- cGUUACGGUAg--UGgggGUUGCGUCGCGg -3'
miRNA:   3'- -UAGUGCUAUauaGCa--CAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 60465 0.74 0.996728
Target:  5'- cUCACGAUGUcAUCGUGcaccucgACGUCGUc -3'
miRNA:   3'- uAGUGCUAUA-UAGCACaa-----UGCAGCGu -5'
10544 5' -46.2 NC_002687.1 + 98262 0.76 0.988103
Target:  5'- uUCugGAUG-GUCGUG-UGCGUCGCu -3'
miRNA:   3'- uAGugCUAUaUAGCACaAUGCAGCGu -5'
10544 5' -46.2 NC_002687.1 + 52333 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51095 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51176 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51241 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228320 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.