Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10544 | 5' | -46.2 | NC_002687.1 | + | 229032 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229097 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229226 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229355 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229420 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229485 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 51305 | 0.8 | 0.912896 |
Target: 5'- -gCACGAUAaAUCGUGcUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACaAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228385 | 0.8 | 0.906735 |
Target: 5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228903 | 0.8 | 0.906735 |
Target: 5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229615 | 0.8 | 0.906735 |
Target: 5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228580 | 0.79 | 0.935061 |
Target: 5'- -gCACGAUAaAUCGUGUUcCGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAuGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228512 | 0.79 | 0.949081 |
Target: 5'- ---uCGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaguGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 54066 | 0.77 | 0.980852 |
Target: 5'- -gCACaAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGcUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 54260 | 0.77 | 0.980852 |
Target: 5'- -gCACaAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGcUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 53083 | 0.77 | 0.980852 |
Target: 5'- -gCACaAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGcUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 53665 | 0.77 | 0.980852 |
Target: 5'- -gCACaAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGcUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 50965 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 51095 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228320 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 51030 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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