Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10544 | 5' | -46.2 | NC_002687.1 | + | 51095 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 51176 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 53019 | 0.76 | 0.982914 |
Target: 5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 295862 | 0.74 | 0.997225 |
Target: 5'- cGUUACGGUAg--UGgggGUUGCGUCGCGg -3' miRNA: 3'- -UAGUGCUAUauaGCa--CAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 60465 | 0.74 | 0.996728 |
Target: 5'- cUCACGAUGUcAUCGUGcaccucgACGUCGUc -3' miRNA: 3'- uAGUGCUAUA-UAGCACaa-----UGCAGCGu -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228027 | 0.73 | 0.997658 |
Target: 5'- --aACGcuugAUCGUGUUACGUUGCAg -3' miRNA: 3'- uagUGCuauaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 50013 | 0.72 | 0.99924 |
Target: 5'- cUgGCGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uAgUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 50899 | 0.72 | 0.99924 |
Target: 5'- cUgGCGAUAaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uAgUGCUAUaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 316279 | 0.7 | 0.999878 |
Target: 5'- gGUCAUGAUGgcgGUgGUGcaAUGUCGCAc -3' miRNA: 3'- -UAGUGCUAUa--UAgCACaaUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 230344 | 0.7 | 0.999843 |
Target: 5'- -aCACGAUAUAUCGUGaUGCaGguaGCAc -3' miRNA: 3'- uaGUGCUAUAUAGCACaAUG-Cag-CGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 54876 | 0.7 | 0.999878 |
Target: 5'- -gCACGAUAaAUCGUa-UACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCAcaAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 309118 | 0.68 | 0.999994 |
Target: 5'- ---gUGGUAUGUCGUGggcaagaguCGUCGCAc -3' miRNA: 3'- uaguGCUAUAUAGCACaau------GCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229377 | 0.67 | 0.999998 |
Target: 5'- cUCACcGUGcuaccugcaccaCGUGUUACGUCGCAa -3' miRNA: 3'- uAGUGcUAUaua---------GCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229291 | 0.67 | 0.999998 |
Target: 5'- -gCACGAcaaAUCGUaUUACGUUGCAg -3' miRNA: 3'- uaGUGCUauaUAGCAcAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 115161 | 0.66 | 1 |
Target: 5'- cUCGCGGcUAUGUUGUGgaGCaUCGCc -3' miRNA: 3'- uAGUGCU-AUAUAGCACaaUGcAGCGu -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 281231 | 0.66 | 1 |
Target: 5'- cGUCACGAaugcUGU-UCGUGccGCGUUGCu -3' miRNA: 3'- -UAGUGCU----AUAuAGCACaaUGCAGCGu -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 72556 | 0.66 | 1 |
Target: 5'- --gGCGGUGUGUCGgcggcgGcgGCGUCgGCAc -3' miRNA: 3'- uagUGCUAUAUAGCa-----CaaUGCAG-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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