miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10544 5' -46.2 NC_002687.1 + 229992 1.08 0.060636
Target:  5'- cAUCACGAUAUAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUAUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230354 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229748 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230114 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230234 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230597 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230719 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230963 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 231085 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229628 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229507 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230476 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230841 0.99 0.181632
Target:  5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229870 0.98 0.201133
Target:  5'- cAUCGCGAUAaAUCGUGUUACGUCGCAa -3'
miRNA:   3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51976 0.98 0.206285
Target:  5'- -gCACGAUAUAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUAUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228255 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229355 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228150 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229097 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229420 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.