miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10544 5' -46.2 NC_002687.1 + 52636 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52041 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 54260 0.77 0.980852
Target:  5'- -gCACaAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGcUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52571 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 54066 0.77 0.980852
Target:  5'- -gCACaAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGcUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 72556 0.66 1
Target:  5'- --gGCGGUGUGUCGgcggcgGcgGCGUCgGCAc -3'
miRNA:   3'- uagUGCUAUAUAGCa-----CaaUGCAG-CGU- -5'
10544 5' -46.2 NC_002687.1 + 51030 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 54730 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 54665 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 54002 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 53019 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52831 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52766 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52506 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52441 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52252 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 52187 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51370 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51241 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 51095 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.