Results 61 - 80 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10544 | 5' | -46.2 | NC_002687.1 | + | 230354 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229628 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229507 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229992 | 1.08 | 0.060636 |
Target: 5'- cAUCACGAUAUAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUAUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 230476 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 230597 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 230719 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229748 | 0.99 | 0.181632 |
Target: 5'- cAUCACGAUAaAUCGUGUUACGUCGCAa -3' miRNA: 3'- -UAGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228027 | 0.73 | 0.997658 |
Target: 5'- --aACGcuugAUCGUGUUACGUUGCAg -3' miRNA: 3'- uagUGCuauaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 60465 | 0.74 | 0.996728 |
Target: 5'- cUCACGAUGUcAUCGUGcaccucgACGUCGUc -3' miRNA: 3'- uAGUGCUAUA-UAGCACaa-----UGCAGCGu -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 309118 | 0.68 | 0.999994 |
Target: 5'- ---gUGGUAUGUCGUGggcaagaguCGUCGCAc -3' miRNA: 3'- uaguGCUAUAUAGCACaau------GCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228903 | 0.8 | 0.906735 |
Target: 5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229226 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229355 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229420 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229485 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229550 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228255 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 228150 | 0.89 | 0.523039 |
Target: 5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5' |
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10544 | 5' | -46.2 | NC_002687.1 | + | 229615 | 0.8 | 0.906735 |
Target: 5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3' miRNA: 3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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