miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10544 5' -46.2 NC_002687.1 + 228967 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229615 0.8 0.906735
Target:  5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228150 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228255 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228449 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228645 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228710 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228775 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228838 0.89 0.523039
Target:  5'- -gCACGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228903 0.8 0.906735
Target:  5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228385 0.8 0.906735
Target:  5'- -gCACGAcaaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUauaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228580 0.79 0.935061
Target:  5'- -gCACGAUAaAUCGUGUUcCGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCACAAuGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 229291 0.67 0.999998
Target:  5'- -gCACGAcaaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUauaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 309118 0.68 0.999994
Target:  5'- ---gUGGUAUGUCGUGggcaagaguCGUCGCAc -3'
miRNA:   3'- uaguGCUAUAUAGCACaau------GCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 316279 0.7 0.999878
Target:  5'- gGUCAUGAUGgcgGUgGUGcaAUGUCGCAc -3'
miRNA:   3'- -UAGUGCUAUa--UAgCACaaUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 230344 0.7 0.999843
Target:  5'- -aCACGAUAUAUCGUGaUGCaGguaGCAc -3'
miRNA:   3'- uaGUGCUAUAUAGCACaAUG-Cag-CGU- -5'
10544 5' -46.2 NC_002687.1 + 228027 0.73 0.997658
Target:  5'- --aACGcuugAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uagUGCuauaUAGCACAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 60465 0.74 0.996728
Target:  5'- cUCACGAUGUcAUCGUGcaccucgACGUCGUc -3'
miRNA:   3'- uAGUGCUAUA-UAGCACaa-----UGCAGCGu -5'
10544 5' -46.2 NC_002687.1 + 228320 0.76 0.982914
Target:  5'- -gCACGAUAaAUCGUaUUACGUUGCAg -3'
miRNA:   3'- uaGUGCUAUaUAGCAcAAUGCAGCGU- -5'
10544 5' -46.2 NC_002687.1 + 228512 0.79 0.949081
Target:  5'- ---uCGAUAaAUCGUGUUACGUUGCAg -3'
miRNA:   3'- uaguGCUAUaUAGCACAAUGCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.