miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10546 3' -50.6 NC_002687.1 + 229977 1.03 0.041726
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAu- -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUuu -5'
10546 3' -50.6 NC_002687.1 + 229733 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 230339 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 230461 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 230582 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 230704 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 230826 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 230948 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 231070 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 229613 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 229492 1.06 0.0269
Target:  5'- uCACCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUGGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 51313 0.7 0.989001
Target:  5'- aAUCGUGCUACgUUGCAgCACGAUu-- -3'
miRNA:   3'- gUGGCACGAUG-GACGUaGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 230099 0.97 0.09132
Target:  5'- uCAgCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUgGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 135263 0.69 0.994402
Target:  5'- aACCGcUGC-ACC-GCGUCGCGGUAc- -3'
miRNA:   3'- gUGGC-ACGaUGGaCGUAGUGCUAUuu -5'
10546 3' -50.6 NC_002687.1 + 230219 0.97 0.09132
Target:  5'- uCAgCGUGCUACCUGCAUCACGAUAAAu -3'
miRNA:   3'- -GUgGCACGAUGGACGUAGUGCUAUUU- -5'
10546 3' -50.6 NC_002687.1 + 25368 0.71 0.975509
Target:  5'- uCAaaGUGUggccGCCUGCGUCACGAUc-- -3'
miRNA:   3'- -GUggCACGa---UGGACGUAGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 106203 0.69 0.994402
Target:  5'- cCGCCGUGU--UCUGUAUCAUGAa--- -3'
miRNA:   3'- -GUGGCACGauGGACGUAGUGCUauuu -5'
10546 3' -50.6 NC_002687.1 + 51983 0.66 0.999698
Target:  5'- aUAUCGUGUUACgUUGCAgCACGAUu-- -3'
miRNA:   3'- -GUGGCACGAUG-GACGUaGUGCUAuuu -5'
10546 3' -50.6 NC_002687.1 + 229378 0.84 0.453588
Target:  5'- uCACCGUGCUACCUGCAcCACGu---- -3'
miRNA:   3'- -GUGGCACGAUGGACGUaGUGCuauuu -5'
10546 3' -50.6 NC_002687.1 + 261912 0.72 0.963758
Target:  5'- aACgGUGCUGCCaaUGUGUCGCGAg--- -3'
miRNA:   3'- gUGgCACGAUGG--ACGUAGUGCUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.