miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10546 5' -46.9 NC_002687.1 + 228806 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 53890 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 53761 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCg -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 51660 0.68 0.999969
Target:  5'- --aCGUAGCACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 228420 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 228742 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 54809 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCg -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 54212 0.68 0.999969
Target:  5'- --aCGUAACACGAUUUAucGUGCUuCa -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcaCACGAuG- -5'
10546 5' -46.9 NC_002687.1 + 230957 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229988 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 231079 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 231201 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugaaacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 231323 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 229866 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugagacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 231445 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacggugaaacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 230474 0.68 0.999968
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUagcacgcugaggcGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA-------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 118333 0.69 0.999958
Target:  5'- uGUgGCGACACGAcgu-GUGUGgCUAg -3'
miRNA:   3'- gCAgCGUUGUGCUaaauCACAC-GAUg -5'
10546 5' -46.9 NC_002687.1 + 230835 0.69 0.999958
Target:  5'- gCGaCGUAACACGAUUUaucgugaugcaGGUacacggugagacGUGCUGCa -3'
miRNA:   3'- -GCaGCGUUGUGCUAAA-----------UCA------------CACGAUG- -5'
10546 5' -46.9 NC_002687.1 + 316068 0.69 0.999927
Target:  5'- uCGUgGCGGCAgGAUUcGGUGcgGCUGg -3'
miRNA:   3'- -GCAgCGUUGUgCUAAaUCACa-CGAUg -5'
10546 5' -46.9 NC_002687.1 + 53632 0.69 0.999877
Target:  5'- --aCGUAAUACGAUUUAuUGUGCUuCg -3'
miRNA:   3'- gcaGCGUUGUGCUAAAUcACACGAuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.