miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10547 5' -47.1 NC_002687.1 + 170164 0.66 1
Target:  5'- cCGUGUcgACGUCGgcgucggccaCGACACGG--UGGa -3'
miRNA:   3'- -GCACAa-UGCAGC----------GUUGUGCUaaACCa -5'
10547 5' -47.1 NC_002687.1 + 156075 0.66 1
Target:  5'- gCGUcg-ACGUCGC-ACAUGGcgUGGUg -3'
miRNA:   3'- -GCAcaaUGCAGCGuUGUGCUaaACCA- -5'
10547 5' -47.1 NC_002687.1 + 27759 0.67 0.999998
Target:  5'- gGUGUUGCGgCGCGACACa------- -3'
miRNA:   3'- gCACAAUGCaGCGUUGUGcuaaacca -5'
10547 5' -47.1 NC_002687.1 + 228020 0.67 0.999993
Target:  5'- uCGUGcUGCaaCGUAACACGAUUUGu- -3'
miRNA:   3'- -GCACaAUGcaGCGUUGUGCUAAACca -5'
10547 5' -47.1 NC_002687.1 + 229250 0.67 0.999993
Target:  5'- uCGUGcUGCaaCGUAACACGAUUUGu- -3'
miRNA:   3'- -GCACaAUGcaGCGUUGUGCUAAACca -5'
10547 5' -47.1 NC_002687.1 + 92737 0.68 0.999987
Target:  5'- uCGUGguagagACGUCgGUGGCACGGggUUGGg -3'
miRNA:   3'- -GCACaa----UGCAG-CGUUGUGCUa-AACCa -5'
10547 5' -47.1 NC_002687.1 + 30996 0.68 0.999976
Target:  5'- --gGUUGCGUCGUAaccaguaaACAUGAUUggGGUu -3'
miRNA:   3'- gcaCAAUGCAGCGU--------UGUGCUAAa-CCA- -5'
10547 5' -47.1 NC_002687.1 + 228570 0.72 0.998074
Target:  5'- uCGUGUUcCGUUGCAGgACGAUUUaGUg -3'
miRNA:   3'- -GCACAAuGCAGCGUUgUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 54614 0.74 0.994942
Target:  5'- ---aUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- gcacAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 52132 0.75 0.98992
Target:  5'- uCGUaUUACGUUGCAGCACGAUUa--- -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAacca -5'
10547 5' -47.1 NC_002687.1 + 230359 0.75 0.987057
Target:  5'- uCGUGUUGCGaCGUAACACGAUa---- -3'
miRNA:   3'- -GCACAAUGCaGCGUUGUGCUAaacca -5'
10547 5' -47.1 NC_002687.1 + 110768 0.76 0.981638
Target:  5'- uGUGUgcUGUCGaCGACGgGAUUUGGUa -3'
miRNA:   3'- gCACAauGCAGC-GUUGUgCUAAACCA- -5'
10547 5' -47.1 NC_002687.1 + 229752 0.76 0.974673
Target:  5'- uCGUGUUGCGaCGUAACACG---UGGUg -3'
miRNA:   3'- -GCACAAUGCaGCGUUGUGCuaaACCA- -5'
10547 5' -47.1 NC_002687.1 + 51105 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 51040 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 50910 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 52197 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 52051 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 51380 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5'
10547 5' -47.1 NC_002687.1 + 229281 0.78 0.942627
Target:  5'- uCGUaUUACGUUGCAGCACGAUUUaGUg -3'
miRNA:   3'- -GCAcAAUGCAGCGUUGUGCUAAAcCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.