miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1055 5' -58.4 NC_000929.1 + 9674 0.66 0.384523
Target:  5'- uUCAGGCacccgGCAGCUCAUuaucagcgcauccaGACaaucaGCGGCa -3'
miRNA:   3'- uAGUCCGg----CGUCGAGUG--------------CUGg----CGUUG- -5'
1055 5' -58.4 NC_000929.1 + 22936 0.66 0.369133
Target:  5'- gGUCAGGCCGUGGUg-ACGcauCCGUGAUc -3'
miRNA:   3'- -UAGUCCGGCGUCGagUGCu--GGCGUUG- -5'
1055 5' -58.4 NC_000929.1 + 7248 0.67 0.318264
Target:  5'- -gCAGGuauCCGCgaAGUUCugGGCCuGCAACu -3'
miRNA:   3'- uaGUCC---GGCG--UCGAGugCUGG-CGUUG- -5'
1055 5' -58.4 NC_000929.1 + 16677 0.68 0.284428
Target:  5'- -gCGGGCCGCAGacagcgcccggaCGCGACaGCGGCa -3'
miRNA:   3'- uaGUCCGGCGUCga----------GUGCUGgCGUUG- -5'
1055 5' -58.4 NC_000929.1 + 8326 0.69 0.252161
Target:  5'- aAUCAGuuGCCGCgAGCUgACGGuCaCGCAACu -3'
miRNA:   3'- -UAGUC--CGGCG-UCGAgUGCU-G-GCGUUG- -5'
1055 5' -58.4 NC_000929.1 + 8767 0.71 0.182066
Target:  5'- cGUCAuGGCaucauagccgCGCAGUUCACGACCG-GACg -3'
miRNA:   3'- -UAGU-CCG----------GCGUCGAGUGCUGGCgUUG- -5'
1055 5' -58.4 NC_000929.1 + 3096 0.72 0.158321
Target:  5'- uUCuGGCgGCGGCgauauUCACGgccuGCCGCAGCa -3'
miRNA:   3'- uAGuCCGgCGUCG-----AGUGC----UGGCGUUG- -5'
1055 5' -58.4 NC_000929.1 + 13108 0.75 0.10006
Target:  5'- -gCAGGCCGCAaugUCAUGACgGCAGCg -3'
miRNA:   3'- uaGUCCGGCGUcg-AGUGCUGgCGUUG- -5'
1055 5' -58.4 NC_000929.1 + 11687 1.06 0.000359
Target:  5'- cAUCAGGCCGCAGCUCACGACCGCAACc -3'
miRNA:   3'- -UAGUCCGGCGUCGAGUGCUGGCGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.