miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 55147 0.66 0.999902
Target:  5'- uAAUACGAUUUauUGUGCUGCAgGGgGa -3'
miRNA:   3'- -UUGUGCUAAAccACACGAUGUgUCgU- -5'
10550 5' -49.4 NC_002687.1 + 224721 0.66 0.999902
Target:  5'- uGGCACGGUccagaUGGUGUGCagggaggauaUGUACGGCGa -3'
miRNA:   3'- -UUGUGCUAa----ACCACACG----------AUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 332885 0.66 0.999873
Target:  5'- gAACGCcag--GGUGUGCUGCAgCcGCAa -3'
miRNA:   3'- -UUGUGcuaaaCCACACGAUGU-GuCGU- -5'
10550 5' -49.4 NC_002687.1 + 195915 0.66 0.999837
Target:  5'- -cCGCG---UGGUGUGUUGCAC-GCGu -3'
miRNA:   3'- uuGUGCuaaACCACACGAUGUGuCGU- -5'
10550 5' -49.4 NC_002687.1 + 152651 0.66 0.999837
Target:  5'- gGACACGuugUGcGUGUGCagcGCACAGgAu -3'
miRNA:   3'- -UUGUGCuaaAC-CACACGa--UGUGUCgU- -5'
10550 5' -49.4 NC_002687.1 + 221507 0.66 0.999837
Target:  5'- -cCGCG---UGGUGUGUUGCAC-GCGu -3'
miRNA:   3'- uuGUGCuaaACCACACGAUGUGuCGU- -5'
10550 5' -49.4 NC_002687.1 + 20080 0.66 0.999837
Target:  5'- -cCGCG---UGGUGUGUUGCAC-GCGu -3'
miRNA:   3'- uuGUGCuaaACCACACGAUGUGuCGU- -5'
10550 5' -49.4 NC_002687.1 + 304176 0.66 0.999833
Target:  5'- -cCGCGAUgacgUUGGUgcgggugGUGCUGC-CGGCGa -3'
miRNA:   3'- uuGUGCUA----AACCA-------CACGAUGuGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229263 0.66 0.999792
Target:  5'- uAACACGAUUUGucGUGCUGCAaGGgGa -3'
miRNA:   3'- -UUGUGCUAAACcaCACGAUGUgUCgU- -5'
10550 5' -49.4 NC_002687.1 + 203228 0.66 0.999792
Target:  5'- aAGCACGAgggaaaccugUUUGGcgGUGaugacgaacguCUGCACGGCAu -3'
miRNA:   3'- -UUGUGCU----------AAACCa-CAC-----------GAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 51393 0.67 0.999577
Target:  5'- cAGCACGAUUUaGUGaGCUgcuuauccucaucGCGCAGCu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGA-------------UGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 50037 0.67 0.999577
Target:  5'- cAGCACGAUUUaGUGaGCUgcuuauccucaucGCGCAGCu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGA-------------UGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 53817 0.67 0.999485
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229332 0.67 0.999485
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229656 0.68 0.99928
Target:  5'- uGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3'
miRNA:   3'- uUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 10035 0.68 0.999219
Target:  5'- uGGCGCGGaagUGGUG-GCaGCAgCAGCAg -3'
miRNA:   3'- -UUGUGCUaa-ACCACaCGaUGU-GUCGU- -5'
10550 5' -49.4 NC_002687.1 + 156186 0.68 0.999047
Target:  5'- cGCACGAggUUGGUgGUGCUcuuCAUGGUAc -3'
miRNA:   3'- uUGUGCUa-AACCA-CACGAu--GUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 228687 0.68 0.998929
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229527 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 229203 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.