miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 54089 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 50988 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 232285 0.69 0.996677
Target:  5'- aGGCAUGAuUUUGGUGUG-UGCACuGCc -3'
miRNA:   3'- -UUGUGCU-AAACCACACgAUGUGuCGu -5'
10550 5' -49.4 NC_002687.1 + 170965 0.69 0.997616
Target:  5'- cAGCACGGcUUGGUGUGUga-GCAGg- -3'
miRNA:   3'- -UUGUGCUaAACCACACGaugUGUCgu -5'
10550 5' -49.4 NC_002687.1 + 229592 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAccuuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229462 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229397 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229268 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAccuuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229074 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229009 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228491 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 50923 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 52724 0.69 0.997179
Target:  5'- cAGCACGAUUUaGUGaGCUGCACA-CAu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcGU- -5'
10550 5' -49.4 NC_002687.1 + 53106 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228622 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAccucuauguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228232 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228362 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAccccuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 229958 0.71 0.988023
Target:  5'- uAGCACGGUgagacGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCUAaaccaCACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 231293 0.71 0.988023
Target:  5'- uAGCACGGUgagacGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCUAaaccaCACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 230444 0.71 0.989451
Target:  5'- uAGCACGcUgaGGcGUGCUGCAUAGCu -3'
miRNA:   3'- -UUGUGCuAaaCCaCACGAUGUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.