miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 230988 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229773 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230866 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230501 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230139 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230622 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230744 1.07 0.027658
Target:  5'- cAACACGAUUUGGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 231110 0.94 0.161567
Target:  5'- cAACACGAUUUaGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230379 0.94 0.161567
Target:  5'- cAACACGAUUUaGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230259 0.94 0.161567
Target:  5'- cAACACGAUUUaGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229895 0.94 0.161567
Target:  5'- cAACACGAUUUaGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229653 0.94 0.161567
Target:  5'- cAACACGAUUUaGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229532 0.88 0.322221
Target:  5'- cAACACGAUUa-GUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUAAacCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 229410 0.87 0.394461
Target:  5'- cAACACGAcUUaGUGUGCUACACAGCAg -3'
miRNA:   3'- -UUGUGCUaAAcCACACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 52529 0.82 0.621723
Target:  5'- cAGCACGAUUUGGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 228005 0.79 0.750468
Target:  5'- cAGCACGAUUcagcGUGCUACACAGCAu -3'
miRNA:   3'- -UUGUGCUAAaccaCACGAUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 230017 0.77 0.833111
Target:  5'- cAACACGAcUUaGUGUGCgACACAGCAg -3'
miRNA:   3'- -UUGUGCUaAAcCACACGaUGUGUCGU- -5'
10550 5' -49.4 NC_002687.1 + 310758 0.74 0.953291
Target:  5'- cGCACGAUggcgGGUagugcacggaaGUGCUACGCGGUg -3'
miRNA:   3'- uUGUGCUAaa--CCA-----------CACGAUGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 51328 0.73 0.970667
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcGCu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU-CGu -5'
10550 5' -49.4 NC_002687.1 + 65751 0.72 0.982836
Target:  5'- cGACACGA-UUGGUGUGgUgaACACGGgCAu -3'
miRNA:   3'- -UUGUGCUaAACCACACgA--UGUGUC-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.