miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 10035 0.68 0.999219
Target:  5'- uGGCGCGGaagUGGUG-GCaGCAgCAGCAg -3'
miRNA:   3'- -UUGUGCUaa-ACCACaCGaUGU-GUCGU- -5'
10550 5' -49.4 NC_002687.1 + 20080 0.66 0.999837
Target:  5'- -cCGCG---UGGUGUGUUGCAC-GCGu -3'
miRNA:   3'- uuGUGCuaaACCACACGAUGUGuCGU- -5'
10550 5' -49.4 NC_002687.1 + 50037 0.67 0.999577
Target:  5'- cAGCACGAUUUaGUGaGCUgcuuauccucaucGCGCAGCu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGA-------------UGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 50923 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 50988 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 51053 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 51118 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACGCA-CAc -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcGU- -5'
10550 5' -49.4 NC_002687.1 + 51328 0.73 0.970667
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcGCu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU-CGu -5'
10550 5' -49.4 NC_002687.1 + 51393 0.67 0.999577
Target:  5'- cAGCACGAUUUaGUGaGCUgcuuauccucaucGCGCAGCu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGA-------------UGUGUCGu -5'
10550 5' -49.4 NC_002687.1 + 51999 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuugucccguuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 52064 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACGCA-CAc -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcGU- -5'
10550 5' -49.4 NC_002687.1 + 52210 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 52275 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 52356 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 52464 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAcccuuucguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 52529 0.82 0.621723
Target:  5'- cAGCACGAUUUGGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAACCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 52594 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAcccguuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 52659 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAcccguuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 52724 0.69 0.997179
Target:  5'- cAGCACGAUUUaGUGaGCUGCACA-CAu -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcGU- -5'
10550 5' -49.4 NC_002687.1 + 52789 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAcccguuuguccacuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.