miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10550 5' -49.4 NC_002687.1 + 52854 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53042 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53106 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53171 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53236 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53300 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53365 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53429 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53494 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53558 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAucuuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53623 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53688 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53752 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAccuuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 53817 0.67 0.999485
Target:  5'- cAGCACGAUUUaGUGaGCUACGCAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 53944 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 54025 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUGCACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 54089 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 54154 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5'
10550 5' -49.4 NC_002687.1 + 54219 0.68 0.998843
Target:  5'- cAGCACGAUUUaGUGaGCUACACAc-- -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGUcgu -5'
10550 5' -49.4 NC_002687.1 + 54283 0.69 0.997774
Target:  5'- cAGCACGAUUUaGUGaGCUACACAcccuuuuguccccuuGCAg -3'
miRNA:   3'- -UUGUGCUAAAcCACaCGAUGUGU---------------CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.